Locus 2170

Sequence ID X_DroMel_CAF1
Location 5,878,265 – 5,878,362
Length 97
Max. P 0.688365
window3518

overview

Window 8

Location 5,878,265 – 5,878,362
Length 97
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 77.87
Mean single sequence MFE -27.35
Consensus MFE -12.97
Energy contribution -13.67
Covariance contribution 0.70
Combinations/Pair 1.19
Mean z-score -2.11
Structure conservation index 0.47
SVM decision value 0.32
SVM RNA-class probability 0.688365
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 5878265 97 + 22224390
GGUGGUUCCCAUACC-AGUACCAA-----UCCCAAU--CCCAUUGACUCGC----------AUCC--ACUCG---UCUCUCGAGUCAUUUGUUUGUUUUCGAGUGCUGCGAGUUGCUUGU
((((((......)))-...)))..-----.......--......(((((((----------(..(--(((((---.....((((.(....)))))....)))))).))))))))...... ( -25.90)
>DroSec_CAF1 83038 91 + 1
GGUGGUUCCCAUACC-AG-----------UCCCAAU--CCCAUUGACUCGC----------AUCC--ACUCG---UCUCUCGAGUCAUUUGUUUGUUUUCGAGUGCUGCGAGUUGCUUGU
((((((......)))-).-----------..))...--......(((((((----------(..(--(((((---.....((((.(....)))))....)))))).))))))))...... ( -25.80)
>DroSim_CAF1 85758 91 + 1
GGUGGUUCCCAUACC-AG-----------UCCCAAU--CCCAUUGACUCGC----------AUCC--ACUCG---UCUCUCGAGUCAUUUGUUUGUUUUCGAGUGCUGCGAGUUGCUUGU
((((((......)))-).-----------..))...--......(((((((----------(..(--(((((---.....((((.(....)))))....)))))).))))))))...... ( -25.80)
>DroEre_CAF1 81071 97 + 1
GGUGGUUCCCAUGCC-AG-----------UCCCAAG--CCCAUUGACUCGCAGCCACUCGCAUCC--ACUCG---UCUCUCGA----UUUGUUUGUUUUCGAGUGCUGCGAGUUGCUUGU
((((((......)))-).-----------.))((((--(.....((((((((((.(((((((..(--(.(((---.....)))----..))..))....)))))))))))))))))))). ( -35.60)
>DroYak_CAF1 89355 104 + 1
GGUGGUUCCCACACC-AC-----------UUCCAAU--CCCAUUGACUCGCAUCCACUCGCAUCC--ACUCGUCGUCUCUCGAGUCAUUUGUUUGUUUUCGAGUGCUGCGAGUUGCUUGU
((((((......)))-))-----------)......--......((((((((..((((((.....--(((((........)))))((......))....)))))).))))))))...... ( -30.30)
>DroAna_CAF1 87584 112 + 1
GGUUGAUCCAAAUCCUUAUAACAAAAUCCUCGCAAUAUCCUCUCCACUU-C-------AGCAUCACAUCUCGACUCCUCGAGAGUCAUUUGUUUGUUUUCGAGUCCUGCGAGUUGCUUGU
((.....))...........((((....((((((.....(((...((..-.-------((((.....((((((....))))))......)))).))....)))...))))))....)))) ( -20.70)
>consensus
GGUGGUUCCCAUACC_AG___________UCCCAAU__CCCAUUGACUCGC__________AUCC__ACUCG___UCUCUCGAGUCAUUUGUUUGUUUUCGAGUGCUGCGAGUUGCUUGU
((((.......)))).............................(((((((.................((((........)))).((((((........))))))..)))))))...... (-12.97 = -13.67 +   0.70)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:27:49 2006