Locus 217

Sequence ID	X_DroMel_CAF1
Location	771,306 – 771,396
Length	90
Max. P	0.712760

overview

Window 8

Location	771,306 – 771,396
Length	90
Sequences	3
Columns	90
Reading direction	forward
Mean pairwise identity	97.78
Mean single sequence MFE	-31.00
Consensus MFE	-30.05
Energy contribution	-30.17
Covariance contribution	0.11
Combinations/Pair	1.03
Mean z-score	-1.41
Structure conservation index	0.97
SVM decision value	-0.07
SVM RNA-class probability	0.500000
Prediction	OTHER

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 771306 90 + 22224390
UUGUCUGCCAUUCAAUUGCGGUUGGCUAAUGGCCAUUUCGCGUGGUCAAGGGACUGAGGGGUUGACGGCUAAGCGCCAUGAAGGUGAAUU
.((((.(((.(((....((((.((((.....))))..))))..((((....))))))).))).))))......((((.....)))).... ( -28.80)
>DroSec_CAF1 85312 90 + 1
UUGUCUGCCAUUCAAUUGCGGUUGGCUAAUGGCCAUUUCGCGUGGUCAAGGGACUGAGGGGUCGAUGGCUAAGCGCCAUGAAGGUGCAUU
.(((..(((.((((...(((.(((((((.(((((.((((....((((....))))))))))))).))))))).)))..)))))))))).. ( -32.10)
>DroSim_CAF1 46557 90 + 1
UUGUCUGCCAUUCAAUUGCGGUUGGCUAAUGGCCAUUUCGCGUGGUCAAGGGACUGAGGGGUCGAUGGCUAAGCGCCAUGAAGGUGCAUU
.(((..(((.((((...(((.(((((((.(((((.((((....((((....))))))))))))).))))))).)))..)))))))))).. ( -32.10)
>consensus
UUGUCUGCCAUUCAAUUGCGGUUGGCUAAUGGCCAUUUCGCGUGGUCAAGGGACUGAGGGGUCGAUGGCUAAGCGCCAUGAAGGUGCAUU
......(((.((((...(((.(((((((.(((((.((((....((((....))))))))))))).))))))).)))..)))))))..... (-30.05 = -30.17 +   0.11)

alignment

secondary structure

dotplot

Window 9

Location	771,306 – 771,396
Length	90
Sequences	3
Columns	90
Reading direction	reverse
Mean pairwise identity	97.78
Mean single sequence MFE	-22.90
Consensus MFE	-21.67
Energy contribution	-21.57
Covariance contribution	-0.11
Combinations/Pair	1.09
Mean z-score	-1.79
Structure conservation index	0.95
SVM decision value	0.38
SVM RNA-class probability	0.712760
Prediction	RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 771306 90 - 22224390
AAUUCACCUUCAUGGCGCUUAGCCGUCAACCCCUCAGUCCCUUGACCACGCGAAAUGGCCAUUAGCCAACCGCAAUUGAAUGGCAGACAA
.............(((.....)))(((..((..((((((....)))...(((...((((.....))))..)))...)))..))..))).. ( -22.10)
>DroSec_CAF1 85312 90 - 1
AAUGCACCUUCAUGGCGCUUAGCCAUCGACCCCUCAGUCCCUUGACCACGCGAAAUGGCCAUUAGCCAACCGCAAUUGAAUGGCAGACAA
...((.((.....)).))...((((((((.......(((....)))...(((...((((.....))))..)))..))).)))))...... ( -23.30)
>DroSim_CAF1 46557 90 - 1
AAUGCACCUUCAUGGCGCUUAGCCAUCGACCCCUCAGUCCCUUGACCACGCGAAAUGGCCAUUAGCCAACCGCAAUUGAAUGGCAGACAA
...((.((.....)).))...((((((((.......(((....)))...(((...((((.....))))..)))..))).)))))...... ( -23.30)
>consensus
AAUGCACCUUCAUGGCGCUUAGCCAUCGACCCCUCAGUCCCUUGACCACGCGAAAUGGCCAUUAGCCAACCGCAAUUGAAUGGCAGACAA
...((.((.....)).))...((((((((.......(((....)))...(((...((((.....))))..)))..))).)))))...... (-21.67 = -21.57 +  -0.11)

alignment

secondary structure

dotplot

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:13 2006