Locus 2166

Sequence ID X_DroMel_CAF1
Location 5,873,747 – 5,873,840
Length 93
Max. P 0.713859
window3508

overview

Window 8

Location 5,873,747 – 5,873,840
Length 93
Sequences 4
Columns 99
Reading direction reverse
Mean pairwise identity 73.64
Mean single sequence MFE -19.80
Consensus MFE -13.56
Energy contribution -15.68
Covariance contribution 2.12
Combinations/Pair 1.09
Mean z-score -1.49
Structure conservation index 0.68
SVM decision value 0.38
SVM RNA-class probability 0.713859
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 5873747 93 - 22224390
------CUCAUAUUCCGUAUGGCAGAUCUGCGAUCUCCGAUCCCCGAUCUCCGAUCCCCGAUCUCCGAUCUCAGAUCUCUUGAUGGAUAAGGCGCAUUA
------.......(((((..((.(((((((.((((...((((...((((...))))...))))...)))).)))))))))..)))))............ ( -27.00)
>DroSim_CAF1 81243 72 - 1
------CUCAUAUUCCGUAUGGCAGAUCUCCGAACUCCGA---------------------UCCCCGAUCUCAGAUCUCUUGAUGGAUAAGGCGCAUUA
------.......(((((..((.((((((..(.....)((---------------------((...))))..))))))))..)))))............ ( -11.80)
>DroEre_CAF1 76774 85 - 1
UCAUAUCUCAUAUUCCGUAUGGCAGAACUCAGAUCGCCGAUCCCC--------------GAUCUCCGAUCUCAGAUCUCUUGAUGGAUAAGGCGCAUUA
.............(((((..((.(((.((.((((((..((((...--------------))))..)))))).)).)))))..)))))............ ( -20.00)
>DroYak_CAF1 84370 86 - 1
-----ACUCAUAUUCCGUU-CACUAAACUGCGAUCUCCGAUCUCC-------GAGCUCAGAUCUCAGAUCUCAGAUCUUUUGAUGGAUAAGCGGCAUUA
-----.........(((((-.......(((.(((((..(((((..-------......)))))..))))).)))((((......)))).)))))..... ( -20.40)
>consensus
______CUCAUAUUCCGUAUGGCAGAACUCCGAUCUCCGAUCCCC______________GAUCUCCGAUCUCAGAUCUCUUGAUGGAUAAGGCGCAUUA
.............(((((..((.(((((((.(((((..((((.................))))..))))).)))))))))..)))))............ (-13.56 = -15.68 +   2.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:27:40 2006