| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 5,866,336 – 5,866,450 |
| Length | 114 |
| Max. P | 0.854168 |
| Location | 5,866,336 – 5,866,450 |
|---|---|
| Length | 114 |
| Sequences | 3 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 92.28 |
| Mean single sequence MFE | -23.33 |
| Consensus MFE | -20.55 |
| Energy contribution | -21.33 |
| Covariance contribution | 0.78 |
| Combinations/Pair | 1.03 |
| Mean z-score | -2.30 |
| Structure conservation index | 0.88 |
| SVM decision value | 0.80 |
| SVM RNA-class probability | 0.854168 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5866336 114 - 22224390 UAGAUUAAUUAUUAAUCACCUAUUUUGAUAGGAAGGGUAGUAUUUCCAUGUCGCAUAUCCAUGCGAUUCUUAAUUUUGUUCAGUUCAAAUGCAAGCCAUAUUAUCCUUAUCGAA ..(((((.....))))).(((((....)))))(((((((((((......(((((((....))))))).......(((((...........)))))..)))))))))))...... ( -25.20) >DroSec_CAF1 71403 109 - 1 UAGAUUAAUUAUUAUUCACCUAUUUUGAUAGAUAGGGUAGUAUUUCCAUGUCGCAUAUCCAUGCGAUUCUUCAUUUUGU-----UCAAAAGCAACCCAUAUUAUCCUUAUCGGA .......................(((((((...((((((((((......(((((((....)))))))........((((-----......))))...))))))))))))))))) ( -21.00) >DroSim_CAF1 74014 109 - 1 UAGAUUAAUUAUUAAUCACCUAUUUUGAUAGGUAGGGUAGUAUUUCCAUGUCGCAUAUCCAUGCGAUUCUUCAUUUCGU-----UCAAAAGCAACCCAUAUUAUCCUUAUCGAA ..(((((.....)))))((((((....))))))((((((((((......(((((((....)))))))..........((-----......)).....))))))))))....... ( -23.80) >consensus UAGAUUAAUUAUUAAUCACCUAUUUUGAUAGGUAGGGUAGUAUUUCCAUGUCGCAUAUCCAUGCGAUUCUUCAUUUUGU_____UCAAAAGCAACCCAUAUUAUCCUUAUCGAA ..(((((.....)))))......(((((((...((((((((((......(((((((....)))))))......(((((.......))))).......))))))))))))))))) (-20.55 = -21.33 + 0.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:27:37 2006