| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 5,863,341 – 5,863,437 |
| Length | 96 |
| Max. P | 0.982285 |
| Location | 5,863,341 – 5,863,437 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 73.04 |
| Mean single sequence MFE | -33.90 |
| Consensus MFE | -13.32 |
| Energy contribution | -14.46 |
| Covariance contribution | 1.14 |
| Combinations/Pair | 1.28 |
| Mean z-score | -2.57 |
| Structure conservation index | 0.39 |
| SVM decision value | 1.91 |
| SVM RNA-class probability | 0.982285 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5863341 96 + 22224390 G---------GGAAGUGGAGUC-GAACUGGUUGGGAUUCACUAUAUGUA----UAUAUAUGCACA--UAGUGGGCAACCGGGAAGGCUG-GCUGUCUUAUCGCUCGGCUUCAU .---------.(((((.(((.(-((.(((((((...((((((((.((((----(....))))).)--)))))))))))))).(((((..-...))))).)))))).))))).. ( -40.30) >DroPse_CAF1 102101 80 + 1 G---------GAA---GGAGUCGGAACUGGUUGGGAUUUGGUA----------------UGCAAAACUGGUGUGCGA-----GAGGCUGUUCUGUCUUAUCGCCUGCCUUCAU .---------(((---((...(((.((..(((..(((.....)----------------).)..)))..))..((((-----(((((......))))).)))))))))))).. ( -22.20) >DroSec_CAF1 68454 100 + 1 G---------GGAAGUGGAGUC-GAACUGGUUGGGAUUCACUAUAUGUACACAUAUGUAUGCACA--UAGUGAGCAACCGGGAAGGCUG-GCUGUCUUAUCGCUCGGCUUCAU .---------.(((((.(((.(-((.(((((((...((((((((.((((.((....)).)))).)--)))))))))))))).(((((..-...))))).)))))).))))).. ( -42.00) >DroSim_CAF1 71081 100 + 1 G---------GGAAGUGGAGUC-GAACUGGUUGGGAUUCACUAUAUGCACAUAUAUGUAUGCACA--UAGUGGGCAACCGGGAAGGCUG-GCUGUCUUAUCGCUCGGCUUCAU .---------.(((((.(((.(-((.(((((((...((((((((.((((.((....)).)))).)--)))))))))))))).(((((..-...))))).)))))).))))).. ( -40.90) >DroEre_CAF1 67010 107 + 1 GUGAAGUCUGGAAAAAGGAGUC-GAACUGGUUGGGAUUUACUAUAGGCA--UAUACACAUGCACA--UAGUGGGCAACCGGGAACGCUG-GCUGUCUUAUCGCCCGGCUUCAU ((((((((.((...((((((((-(..(((((((...((((((((..(((--(......))))..)--))))))))))))))......))-))).))))....)).)))))))) ( -36.10) >DroPer_CAF1 91738 80 + 1 G---------GAA---GAAGUCGGAACUGGUUGGGAUUUGGUA----------------UGCAAAACUGGUGUGCGA-----GAGGCUGUUCUGUCUUAUCGCCUGCCUUCAU .---------...---((((.(((.((..(((..(((.....)----------------).)..)))..))..((((-----(((((......))))).))))))).)))).. ( -21.90) >consensus G_________GAAAGUGGAGUC_GAACUGGUUGGGAUUCACUAUAUG_A____UAU_UAUGCACA__UAGUGGGCAACCGGGAAGGCUG_GCUGUCUUAUCGCCCGGCUUCAU ................((((((....(((((((...(((((((........................)))))))))))))).(((((......))))).......)))))).. (-13.32 = -14.46 + 1.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:27:36 2006