Locus 2159

Sequence ID X_DroMel_CAF1
Location 5,856,554 – 5,856,649
Length 95
Max. P 0.883103
window3500

overview

Window 0

Location 5,856,554 – 5,856,649
Length 95
Sequences 3
Columns 95
Reading direction reverse
Mean pairwise identity 85.71
Mean single sequence MFE -20.47
Consensus MFE -16.76
Energy contribution -16.77
Covariance contribution 0.01
Combinations/Pair 1.11
Mean z-score -2.35
Structure conservation index 0.82
SVM decision value 0.93
SVM RNA-class probability 0.883103
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 5856554 95 - 22224390
CCAUAUUAGGAUUCUUUAAAGGAUGUUUUACACUUGUAUCAUUUUUAAAUGUUCAUGUAAGAUAAGAUAUCAUUUGAGCUUAGGAUCUCAGAAUG
.(((.((..(((((((((((.(((((((((..(((((((((((....))))...))))))).))))))))).)))))....))))))..)).))) ( -16.90)
>DroSec_CAF1 61738 90 - 1
CCAUAUUAGGAUUCUAUAAAGGAUGCAUUAAUAAUGUAUCACUUUUGAUUGUUCAUGUAAGAUAAGAUAUCAAUUGAGCCUAGGAUCCAA-----
........((((((((.(((((((((((.....))))))).)))).....(((((.....((((...))))...))))).))))))))..----- ( -22.30)
>DroSim_CAF1 64395 90 - 1
CCAUAUUAGGAUUCUAUAAAGGAUGCAUUAAUAUUGUAUCACUUUUGAUUGUUCAUUUAAGAUAAGAUAUCAAUUGAGCUUAGGAUCCAA-----
........((((((((.((((((((((.......)))))).)))).....(((((.....((((...))))...))))).))))))))..----- ( -22.20)
>consensus
CCAUAUUAGGAUUCUAUAAAGGAUGCAUUAAUAUUGUAUCACUUUUGAUUGUUCAUGUAAGAUAAGAUAUCAAUUGAGCUUAGGAUCCAA_____
........((((((((.((((((((((.......)))))).)))).....(((((.....((((...))))...))))).))))))))....... (-16.76 = -16.77 +   0.01)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:27:33 2006