Locus 2156

Sequence ID X_DroMel_CAF1
Location 5,850,664 – 5,850,758
Length 94
Max. P 0.703852
window3496

overview

Window 6

Location 5,850,664 – 5,850,758
Length 94
Sequences 6
Columns 95
Reading direction forward
Mean pairwise identity 79.05
Mean single sequence MFE -24.08
Consensus MFE -18.09
Energy contribution -17.57
Covariance contribution -0.53
Combinations/Pair 1.15
Mean z-score -1.20
Structure conservation index 0.75
SVM decision value 0.36
SVM RNA-class probability 0.703852
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 5850664 94 + 22224390
GGCUAAGAGGCUCUAAUUACAGCUUGUUACCCUGAUGCAGCGGCCACACAGGUCGU-GGCUCACUUCGCUUUCGCCUUCGCCUUGGAAUGGAGUG
((.(((.(((((........))))).))).))....((.((((((.....))))))-.)).(((((((.((((((....))...))))))))))) ( -27.80)
>DroVir_CAF1 74011 73 + 1
GGCUAAGGGGCUCUAAUUACAGCUUGUUAACCUGAUGCACCGGCCACACAGGUCGCAGGCUCACUUUGCUU-------CU---------------
.....((((((.........(((((((..(((((..((....))....))))).)))))))......))))-------))--------------- ( -19.66)
>DroPse_CAF1 88401 77 + 1
GGCUAAGAGGCUCUAAUUACAGCUUGUUACCUUGAUGCAGCGGCCACACAGGUCGU-GGCUCACUUCAACUUCGACUC-----------------
((.(((.(((((........))))).))))).(((.((.((((((.....))))))-.)))))...............----------------- ( -21.60)
>DroEre_CAF1 54999 85 + 1
GGCUAAGAGGCUCUAAUUACAGCUUGUUACCCUGAUGCAGCGGCCACACAGGUCGU-GGCUCACUUCGCCUUCGCCUUCGCCU---------UCG
((((((.(((((........))))).)))....((.((.((((((.....))))))-(((.......)))...))..))))).---------... ( -25.00)
>DroAna_CAF1 59571 74 + 1
GGCUAAGAGGCUCUAAUUACAGCUUGUUAACUUGAUGCCAUGGCCACACAGGUCGU-GGCUCACUUCGCCAU------------G-AA-------
((((((.(((((........))))).)))...(((.(((((((((.....))))))-))))))....)))..------------.-..------- ( -28.80)
>DroPer_CAF1 77973 77 + 1
GGCUAAGAGGCUCUAAUUACAGCUUGUUACCUUGAUGCAGCGGCCACACAGGUCGU-GGCUCACUUCAACUUCGACUC-----------------
((.(((.(((((........))))).))))).(((.((.((((((.....))))))-.)))))...............----------------- ( -21.60)
>consensus
GGCUAAGAGGCUCUAAUUACAGCUUGUUACCCUGAUGCAGCGGCCACACAGGUCGU_GGCUCACUUCGCCUUCG_CU__________________
((.(((.(((((........))))).))).))(((.((..(((((.....)))))...)))))................................ (-18.09 = -17.57 +  -0.53)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:27:29 2006