| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 5,850,374 – 5,850,470 |
| Length | 96 |
| Max. P | 0.766482 |
| Location | 5,850,374 – 5,850,470 |
|---|---|
| Length | 96 |
| Sequences | 4 |
| Columns | 98 |
| Reading direction | reverse |
| Mean pairwise identity | 66.67 |
| Mean single sequence MFE | -21.15 |
| Consensus MFE | -8.62 |
| Energy contribution | -8.62 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.21 |
| Structure conservation index | 0.41 |
| SVM decision value | 0.52 |
| SVM RNA-class probability | 0.766482 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5850374 96 - 22224390 UGAUAAAUUUCACCUGAGCUUCGCGUCUUGCACUUACAGGUGAUAGAUAGUGAACGCGAUCG-GAGGAGCAAUCGAAAGGAAAA-GCCAAAUAAAUGG ........(((..(((((((((((((((..((((....))))..)))).))))).))..)))-)..)))...((....))....-.(((......))) ( -21.10) >DroPse_CAF1 88148 79 - 1 UGUUCAAUUUCACCUGAACAAAGGGUCUUACAUUUACAGGUGAU----AGCU--CCCUGCCC-CCCGAACCACCGAAAG----A-CCCUCA------- ((((((........)))))).((((((((.......((((.((.----...)--)))))...-..((......)).)))----)-))))..------- ( -21.90) >DroEre_CAF1 54741 86 - 1 UGAUAAAUUUCACCUGAGCCUCGCGUCUUGCACUUACAGGUGAU----GGUGAAGCAGAUCG-GAGUGGCAACCGAAAGCGAAAAACCAAA------- .........(((((((......((.....)).....)))))))(----(((...((...(((-(........))))..)).....))))..------- ( -20.70) >DroPer_CAF1 77712 80 - 1 UGUUCAAUUUCACCUGAACAAAGGGUCUUACAUUUACAGGUGAU----AGCC--CCCUGCCCCCCCGAACCACCGAAAG----A-CCCUCA------- ((((((........)))))).((((((((.......((((.(..----....--)))))......((......)).)))----)-))))..------- ( -20.90) >consensus UGAUAAAUUUCACCUGAACAAAGCGUCUUACACUUACAGGUGAU____AGCG__CCCGACCC_CACGAACAACCGAAAG____A_CCCAAA_______ .........(((((((....................)))))))..............................(....)................... ( -8.62 = -8.62 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:27:29 2006