Locus 2154

Sequence ID X_DroMel_CAF1
Location 5,850,028 – 5,850,120
Length 92
Max. P 0.953742
window3494

overview

Window 4

Location 5,850,028 – 5,850,120
Length 92
Sequences 3
Columns 98
Reading direction reverse
Mean pairwise identity 77.17
Mean single sequence MFE -23.24
Consensus MFE -15.25
Energy contribution -15.37
Covariance contribution 0.11
Combinations/Pair 1.05
Mean z-score -2.03
Structure conservation index 0.66
SVM decision value 1.44
SVM RNA-class probability 0.953742
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 5850028 92 - 22224390
UAUUUUUUUUUGUUUUUGGUCAGAUUUUCUUUGUUUUUGGGCCAAAAACAAUGGGUUCAAACGGCUGCGCUUCGGCGGAAAAGGAAAAAAAC------
...((((((((.(((((((((((.....)).....((((((((..........)))))))).)))).(((....)))))))).)))))))).------ ( -23.00)
>DroSec_CAF1 55259 79 - 1
UUUUUUU------------UCAGAUUUUCUUUGUUUUUGGGCCAAAAACAAUGGGUUCAAACGGCUGCGCUUCGGCGGAAAAGGAAA-AAAC------
..(((((------------((...(((((...(((((((((((..........)))))))).)))..(((....)))))))).))))-))).------ ( -21.70)
>DroAna_CAF1 58441 86 - 1
UGUUUUG-----------GCCCUUUUUUUUUUGGUUUUGGGCCAAAAACAAUGGGUUCAAACGGCUGCGCUUCAGCGGAAAACAAAA-AAAGCCAUUG
..(((((-----------((((................))))))))).((((((.((.......((((......)))).........-.)).)))))) ( -25.02)
>consensus
UAUUUUU___________GUCAGAUUUUCUUUGUUUUUGGGCCAAAAACAAUGGGUUCAAACGGCUGCGCUUCGGCGGAAAAGGAAA_AAAC______
........................((((((((...((((((((..........))))))))......(((....)))..))))))))........... (-15.25 = -15.37 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:27:28 2006