Locus 2153

Sequence ID X_DroMel_CAF1
Location 5,847,150 – 5,847,247
Length 97
Max. P 0.657512
window3492 window3493

overview

Window 2

Location 5,847,150 – 5,847,247
Length 97
Sequences 3
Columns 97
Reading direction forward
Mean pairwise identity 93.03
Mean single sequence MFE -21.37
Consensus MFE -18.07
Energy contribution -17.97
Covariance contribution -0.11
Combinations/Pair 1.08
Mean z-score -2.12
Structure conservation index 0.85
SVM decision value 0.26
SVM RNA-class probability 0.657512
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 5847150 97 + 22224390
UCAAGCAUCCCAUGGUGACGGAAGUAUCUAAAGACGUAUCUGCAAGGUAUGGAUACAAAAUGUUUAAGAUACAUACAUAUAUGGAAAGAGAUGCAGU
....((((((((((....)....((((((..((((((((((.........)))))).....)))).))))))........)))).....)))))... ( -21.30)
>DroSec_CAF1 52457 93 + 1
UCAAGCAUUCCAUGGUGACGGAAGUAUCUAAAGACGUAUCUGCAAGGUAUGGAUACAAAAUCUUUAAGAUAC----AUAUAUAGAACAAGAUGCAGU
....(((((((..(....)))))(((((((((((.((((((.........))))))....))))).))))))----...............)))... ( -21.60)
>DroSim_CAF1 55478 93 + 1
UCAAGCAUCCCAUGGUGACGGAAGUAUCUAAAUACGUAUCUGCAAGGUAUGGAUACAAAAUGUUUAAGAUAC----AUAUAUAGAACAAGAUGCAGU
....(((((...((....))...(((((((((((.((((((.........))))))....))))).))))))----.............)))))... ( -21.20)
>consensus
UCAAGCAUCCCAUGGUGACGGAAGUAUCUAAAGACGUAUCUGCAAGGUAUGGAUACAAAAUGUUUAAGAUAC____AUAUAUAGAACAAGAUGCAGU
....(((((((........))..(((((((((((.((((((.........))))))....))))).)))))).................)))))... (-18.07 = -17.97 +  -0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 3

Location 5,847,150 – 5,847,247
Length 97
Sequences 3
Columns 97
Reading direction reverse
Mean pairwise identity 93.03
Mean single sequence MFE -20.02
Consensus MFE -15.67
Energy contribution -16.01
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -2.33
Structure conservation index 0.78
SVM decision value 0.07
SVM RNA-class probability 0.569645
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 5847150 97 - 22224390
ACUGCAUCUCUUUCCAUAUAUGUAUGUAUCUUAAACAUUUUGUAUCCAUACCUUGCAGAUACGUCUUUAGAUACUUCCGUCACCAUGGGAUGCUUGA
...(((((((.........(((...((((((...((..((((((.........))))))...))....))))))...)))......))))))).... ( -18.66)
>DroSec_CAF1 52457 93 - 1
ACUGCAUCUUGUUCUAUAUAU----GUAUCUUAAAGAUUUUGUAUCCAUACCUUGCAGAUACGUCUUUAGAUACUUCCGUCACCAUGGAAUGCUUGA
...((((..............----((((((.((((((...(((((((.....))..))))))))))))))))).(((((....))))))))).... ( -20.20)
>DroSim_CAF1 55478 93 - 1
ACUGCAUCUUGUUCUAUAUAU----GUAUCUUAAACAUUUUGUAUCCAUACCUUGCAGAUACGUAUUUAGAUACUUCCGUCACCAUGGGAUGCUUGA
...(((((..((((((.((((----((((((....((....(((....)))..)).)))))))))).)))).))..((((....))))))))).... ( -21.20)
>consensus
ACUGCAUCUUGUUCUAUAUAU____GUAUCUUAAACAUUUUGUAUCCAUACCUUGCAGAUACGUCUUUAGAUACUUCCGUCACCAUGGGAUGCUUGA
...(((((.................((((((.........((((((((.....))..)))))).....))))))..((((....))))))))).... (-15.67 = -16.01 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:27:27 2006