| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 5,835,116 – 5,835,213 |
| Length | 97 |
| Max. P | 0.930100 |
| Location | 5,835,116 – 5,835,213 |
|---|---|
| Length | 97 |
| Sequences | 5 |
| Columns | 106 |
| Reading direction | reverse |
| Mean pairwise identity | 81.10 |
| Mean single sequence MFE | -23.74 |
| Consensus MFE | -11.26 |
| Energy contribution | -9.90 |
| Covariance contribution | -1.36 |
| Combinations/Pair | 1.40 |
| Mean z-score | -2.70 |
| Structure conservation index | 0.47 |
| SVM decision value | 1.20 |
| SVM RNA-class probability | 0.930100 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5835116 97 - 22224390 CCCUCCAA----CAACUGAAUACAU--AU---UAUAUAUCUACAUAUAUGUACGCACGAUAUGUACAUAUAUGAAACCGCACCGGACGGAGUCGCGUCAUUAGCCU ..((((..----.............--..---..........((((((((((((.......))))))))))))...(((...)))..))))..((.......)).. ( -21.50) >DroSec_CAF1 40501 96 - 1 CCCUCCAA----CAACUAAAUACAU--AUA----UGAAUCUACAUAUAUGUACGCACGAUAUGUGCAUAAAUGAAACCACACCGGACGGAGUCGCGUCAUUAGCCU ..((((..----((......(((((--(((----((......)))))))))).((((.....)))).....))...((.....))..))))..((.......)).. ( -22.20) >DroSim_CAF1 43630 100 - 1 CCCUCCAA----CAACUAAAUACAU--AUAUGUAUGAAUCUACAUAUAUGUACGCACGAUAUGUGCAUAAAUGAAACCACACCGGACGGAGUCGCGUCAUUAGCCU ..((((..----((......(((((--(((((((......)))))))))))).((((.....)))).....))...((.....))..))))..((.......)).. ( -24.90) >DroEre_CAF1 39866 96 - 1 CCCUCCAA----CAACUAAAUAGG--CAUCUGCAUAUAUCUACAUAUAUGUACGCACGAUAUGUG----UAGGAAACCGCGCCGGACGGAGUCACGUCAUUAGCCU ........----.........(((--(.((((((((((((((((....)))).....))))))))----))))...........((((......))))....)))) ( -25.40) >DroYak_CAF1 41067 102 - 1 CCCUUUAAAUCUAAACUAAAUACAUAUAUCUACAUAUAAGUACGUAGAUAUAUGUACGUUAUGUA----UUGGAAACCGCACCGGACGGAGUCGCGUCAUUAGCCU .........((((((((((.(((((((((((((.((....)).)))))))))))))..))).)).----)))))....((....((((......))))....)).. ( -24.70) >consensus CCCUCCAA____CAACUAAAUACAU__AUAU_CAUAUAUCUACAUAUAUGUACGCACGAUAUGUGCAUAUAUGAAACCGCACCGGACGGAGUCGCGUCAUUAGCCU ..((((..................................(((((((.((....))..)))))))...........((.....))..))))............... (-11.26 = -9.90 + -1.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:27:25 2006