Locus 2151

Sequence ID X_DroMel_CAF1
Location 5,834,554 – 5,834,660
Length 106
Max. P 0.987526
window3490

overview

Window 0

Location 5,834,554 – 5,834,660
Length 106
Sequences 4
Columns 107
Reading direction forward
Mean pairwise identity 91.73
Mean single sequence MFE -32.47
Consensus MFE -28.05
Energy contribution -28.68
Covariance contribution 0.63
Combinations/Pair 1.08
Mean z-score -2.93
Structure conservation index 0.86
SVM decision value 2.08
SVM RNA-class probability 0.987526
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 5834554 106 + 22224390
UCAACACCCUGGUGGACCUACCACCAGCUCCCAAAAGUGGUAAGUAAUUCGAGCCACGAGCCCACUUUUGGCUACCACCGAUUGCACCACCC-AUCGUAACUAGAAC
...((...(((((((.....))))))).........(((((..((((((..(((((.(((....))).)))))......)))))))))))..-...))......... ( -29.20)
>DroSec_CAF1 39900 107 + 1
UCAACACCCUGGUGGACCUGCCACCAGCUCCCAAAAGUGGUAAGUAAUCCGAGACACGAGUCCGCUUUUGGGUACCACCGAUUGCACCACCCAAUCGUAACUAGAAC
........(((((((.....)))))))..(((((((((((...((..........))....)))))))))))......((((((.......)))))).......... ( -32.60)
>DroSim_CAF1 43025 107 + 1
UCAACACCCUGGUGGACCUGCCACCAGCUCCCAAAAGUGGUAAGUAAUCCGAGACACGAGCCCACUUUUGGGUACCACCGAUUGCACCACCCAAUCGUAACUAGAAC
........(((((((.....)))))))..(((((((((((...((..........))....)))))))))))......((((((.......)))))).......... ( -32.30)
>DroEre_CAF1 39240 104 + 1
UCAACACCCUGGUGGACCUGCCACCAGCUCCCAAAAGUGGUAAGUAAUCCGAGCCACG-GCCCACUUUUGGGCAC-GUCGAUUGCUCCAUCC-GGCGCAACUAGAAC
((.((...(((((((.....)))))))..(((((((((((........(((.....))-).)))))))))))...-)).))((((.((....-)).))))....... ( -35.80)
>consensus
UCAACACCCUGGUGGACCUGCCACCAGCUCCCAAAAGUGGUAAGUAAUCCGAGACACGAGCCCACUUUUGGGUACCACCGAUUGCACCACCC_AUCGUAACUAGAAC
........(((((((.....)))))))..(((((((((((...((..........))....)))))))))))......((((((.......)))))).......... (-28.05 = -28.68 +   0.63)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:27:24 2006