Locus 215

Sequence ID	X_DroMel_CAF1
Location	765,526 – 765,646
Length	120
Max. P	0.999806

overview

Window 5

Location	765,526 – 765,646
Length	120
Sequences	5
Columns	120
Reading direction	forward
Mean pairwise identity	94.82
Mean single sequence MFE	-39.24
Consensus MFE	-35.50
Energy contribution	-35.94
Covariance contribution	0.44
Combinations/Pair	1.03
Mean z-score	-2.68
Structure conservation index	0.90
SVM decision value	4.13
SVM RNA-class probability	0.999806
Prediction	RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 765526 120 + 22224390
AGGCUGCGAUCAAGGAUCUGGCGCCAGAAAACACAACAACUCACCUGUCCCUCUCUAACAGCUGCUAGUGGUUGUUGGUGGCUUUCGCUCCCUCUUCGUCAGCUCCAUCAUCGCCGUCUC
((((.(((((...(((.((((((..(((......((((((.(((..((..((.......))..))..)))))))))((..((....))..))))).)))))).)))...))))).)))). ( -39.20)
>DroSec_CAF1 78581 120 + 1
AGGCUGCGAUCAAGGAUCUGGCGCCAGAAAACACAACAACUCACCUGUCCCUCUCUAACAGCUGCUAGUGGUUGUUGGUGGCUUUCGCUCCCUCUUCGUCAGCUCCAUCAUCGCCGUCUC
((((.(((((...(((.((((((..(((......((((((.(((..((..((.......))..))..)))))))))((..((....))..))))).)))))).)))...))))).)))). ( -39.20)
>DroSim_CAF1 41541 120 + 1
AGGCUGCGAUCAAGGAUCUGGCGCCAGAAAACACAACAACUCACCUGUCCCUCUCUAACAGCUGCUAGUGGUUGUUGGUGGCUUUCGCUCCCUCUUCGUCAGCUCCAUCAUCGCCGUCUC
((((.(((((...(((.((((((..(((......((((((.(((..((..((.......))..))..)))))))))((..((....))..))))).)))))).)))...))))).)))). ( -39.20)
>DroEre_CAF1 94175 112 + 1
AGGCUGCGAUCAAGGAUCUGGCGCCAGA--ACACAACAACUCACCUGUCCCUGUCUAACAGCUGCUAGUGGUUGUUGCUGGCUCU------CUCUUCGUCAGCUCCAUCAUCGCCGUCUC
((((.(((((...(((.((((((((((.--...(((((((.(((..((..(((.....)))..))..)))))))))))))))...------......))))).)))...))))).)))). ( -42.50)
>DroYak_CAF1 82965 118 + 1
AGGCUGCGAUCAAGGAUCUGGCGCCAGA--ACACAACAACUCACCUGUCCCCGUCUAACAGCUGCUAGUGGUUGUUGCUGGCUCUCGCUCCCUCUUCGUCAGCUCCAUCAUUGCCGUCUC
((((.(((((...(((.((((((((((.--...(((((((.(((..((..(.(.....).)..))..)))))))))))))))....(....).....))))).)))...))))).)))). ( -36.10)
>consensus
AGGCUGCGAUCAAGGAUCUGGCGCCAGAAAACACAACAACUCACCUGUCCCUCUCUAACAGCUGCUAGUGGUUGUUGGUGGCUUUCGCUCCCUCUUCGUCAGCUCCAUCAUCGCCGUCUC
((((.(((((...(((.((((((..(((...(((((((((.(((..((..((.......))..))..)))))))))).))((....))....))).)))))).)))...))))).)))). (-35.50 = -35.94 +   0.44)

alignment

secondary structure

dotplot

Window 6

Location	765,526 – 765,646
Length	120
Sequences	5
Columns	120
Reading direction	reverse
Mean pairwise identity	94.82
Mean single sequence MFE	-42.22
Consensus MFE	-35.58
Energy contribution	-36.58
Covariance contribution	1.00
Combinations/Pair	1.00
Mean z-score	-1.51
Structure conservation index	0.84
SVM decision value	0.57
SVM RNA-class probability	0.785720
Prediction	RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 765526 120 - 22224390
GAGACGGCGAUGAUGGAGCUGACGAAGAGGGAGCGAAAGCCACCAACAACCACUAGCAGCUGUUAGAGAGGGACAGGUGAGUUGUUGUGUUUUCUGGCGCCAGAUCCUUGAUCGCAGCCU
......(((((.(.(((.(((.((.(((((..((....))..)).(((((.(((..((.(((((.......))))).))))).)))))....)))..)).))).))).).)))))..... ( -42.50)
>DroSec_CAF1 78581 120 - 1
GAGACGGCGAUGAUGGAGCUGACGAAGAGGGAGCGAAAGCCACCAACAACCACUAGCAGCUGUUAGAGAGGGACAGGUGAGUUGUUGUGUUUUCUGGCGCCAGAUCCUUGAUCGCAGCCU
......(((((.(.(((.(((.((.(((((..((....))..)).(((((.(((..((.(((((.......))))).))))).)))))....)))..)).))).))).).)))))..... ( -42.50)
>DroSim_CAF1 41541 120 - 1
GAGACGGCGAUGAUGGAGCUGACGAAGAGGGAGCGAAAGCCACCAACAACCACUAGCAGCUGUUAGAGAGGGACAGGUGAGUUGUUGUGUUUUCUGGCGCCAGAUCCUUGAUCGCAGCCU
......(((((.(.(((.(((.((.(((((..((....))..)).(((((.(((..((.(((((.......))))).))))).)))))....)))..)).))).))).).)))))..... ( -42.50)
>DroEre_CAF1 94175 112 - 1
GAGACGGCGAUGAUGGAGCUGACGAAGAG------AGAGCCAGCAACAACCACUAGCAGCUGUUAGACAGGGACAGGUGAGUUGUUGUGU--UCUGGCGCCAGAUCCUUGAUCGCAGCCU
......(((((.(.(((.(((.((.....------(((((..((((((((((((.((..(((.....))).).).)))).))))))))))--)))..)).))).))).).)))))..... ( -39.10)
>DroYak_CAF1 82965 118 - 1
GAGACGGCAAUGAUGGAGCUGACGAAGAGGGAGCGAGAGCCAGCAACAACCACUAGCAGCUGUUAGACGGGGACAGGUGAGUUGUUGUGU--UCUGGCGCCAGAUCCUUGAUCGCAGCCU
.....(((..((((.(((((.....))..((.((.((((((((((((.(((.(((((....)))))..(....).)))..))))))).))--))).)).)).....))).))))..))). ( -44.50)
>consensus
GAGACGGCGAUGAUGGAGCUGACGAAGAGGGAGCGAAAGCCACCAACAACCACUAGCAGCUGUUAGAGAGGGACAGGUGAGUUGUUGUGUUUUCUGGCGCCAGAUCCUUGAUCGCAGCCU
......(((((.(.(((.(((.((.(((((..((....))..)).(((((.(((..((.(((((.......))))).))))).)))))....)))..)).))).))).).)))))..... (-35.58 = -36.58 +   1.00)

alignment

secondary structure

dotplot

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:10 2006