Locus 2149

Sequence ID X_DroMel_CAF1
Location 5,820,017 – 5,820,114
Length 97
Max. P 0.640759
window3488

overview

Window 8

Location 5,820,017 – 5,820,114
Length 97
Sequences 4
Columns 97
Reading direction reverse
Mean pairwise identity 83.51
Mean single sequence MFE -25.78
Consensus MFE -18.62
Energy contribution -20.38
Covariance contribution 1.75
Combinations/Pair 1.00
Mean z-score -1.63
Structure conservation index 0.72
SVM decision value 0.22
SVM RNA-class probability 0.640759
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 5820017 97 - 22224390
UUAGAACUAAGCUGUUGUGUACUUUACAUUUGCUUCCCCAAGUGCUGAUGACUUUUUCAUUAAUGGACACGCAGUUCAGGGCGUGAAAAUGCGAGAA
......((.((((((.((((......((((((......)))))).((((((.....))))))....)))))))))).)).((((....))))..... ( -23.50)
>DroSec_CAF1 25537 97 - 1
UUAGAACUGAGCUGUUGUGUACUUCAAAUUUGCUUUCCCAAGUGCUGAUGACUUUUUCAUUAAUGGACACGCAGUUCAGGGCGUGAAAAUGCGAGAA
......(((((((((.((((.......(((((......)))))..((((((.....))))))....))))))))))))).((((....))))..... ( -27.20)
>DroSim_CAF1 27430 97 - 1
UUAGAACUGAGCUGUUGUGUACUUCAAAUUUGCUUUCCCAAGUGCUGAUGACUUUUUCAUUAAUGGACACGCAGUUCAGGGCGUGAAAAUGCGAGAA
......(((((((((.((((.......(((((......)))))..((((((.....))))))....))))))))))))).((((....))))..... ( -27.20)
>DroEre_CAF1 25213 82 - 1
UUAGAACUGAGGUGUAGUAAACUGCACUCU---------------UGCUGACUUUUUCAUUAAGGGCAUCGCAGUUCAGGGCGUGGAAAUGCGAGAA
...((((((.(((((((....)))).((((---------------((.(((.....))).)))))).))).))))))...((((....))))..... ( -25.20)
>consensus
UUAGAACUGAGCUGUUGUGUACUUCAAAUUUGCUUUCCCAAGUGCUGAUGACUUUUUCAUUAAUGGACACGCAGUUCAGGGCGUGAAAAUGCGAGAA
......(((((((((.((((...........((((....))))..((((((.....))))))....))))))))))))).((((....))))..... (-18.62 = -20.38 +   1.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:27:22 2006