Locus 2147

Sequence ID X_DroMel_CAF1
Location 5,818,182 – 5,818,280
Length 98
Max. P 0.794903
window3484

overview

Window 4

Location 5,818,182 – 5,818,280
Length 98
Sequences 4
Columns 109
Reading direction forward
Mean pairwise identity 85.53
Mean single sequence MFE -13.86
Consensus MFE -9.85
Energy contribution -9.47
Covariance contribution -0.38
Combinations/Pair 1.15
Mean z-score -1.93
Structure conservation index 0.71
SVM decision value 0.60
SVM RNA-class probability 0.794903
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 5818182 98 + 22224390
CAUAACCGCCAGCAUUUGCCCCAUCCCCCAUUCCUACAUACUCGCAUAUCUCAUCCUAUGAAUAA-----------AUAUCUUUUUACUGGUGGCCCUUUAAUUGAAUU
.....(((((((................................((((........))))..(((-----------(......)))))))))))............... ( -11.50)
>DroSec_CAF1 23746 96 + 1
CAUAACCGCCAGCAUUUGCCC--UACCCCAUUCCUACAUACUCGUAUAUCUCAUCCUAUGAAUAA-----------AUAUCUUUUUACUGGUGGCCCUUUAAUUGAAUU
.....(((((((.........--..................(((((..........))))).(((-----------(......)))))))))))............... ( -11.70)
>DroSim_CAF1 25662 96 + 1
CAUAACCGCCAGAAUUUGCCC--UCCCCCAUUCCUACACACUCGCAUAUCUCAUCCUAUGAAUAA-----------AUAUCUUUUUACUGGUGGCCCUUUAAUUGAAUU
.....(((((((.........--.....................((((........))))..(((-----------(......)))))))))))............... ( -12.20)
>DroYak_CAF1 24329 106 + 1
CAUAACCGCCAGCAUUUGCCC--UUCCCACUUCUUGCAUAUUCACAUAUG-AAUAAUGUGAAUAAUUCACAUACAUAUAUCUUUUUACUGGUGGCCCUUUAAUUGAAUU
.....(((((((....(((..--............)))(((((((((...-....))))))))).......................)))))))............... ( -20.04)
>consensus
CAUAACCGCCAGCAUUUGCCC__UCCCCCAUUCCUACAUACUCGCAUAUCUCAUCCUAUGAAUAA___________AUAUCUUUUUACUGGUGGCCCUUUAAUUGAAUU
.....(((((((................................((((........)))).................((......)))))))))............... ( -9.85 =  -9.47 +  -0.38)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:27:19 2006