| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 5,803,595 – 5,803,700 |
| Length | 105 |
| Max. P | 0.671817 |
| Location | 5,803,595 – 5,803,700 |
|---|---|
| Length | 105 |
| Sequences | 6 |
| Columns | 105 |
| Reading direction | reverse |
| Mean pairwise identity | 77.27 |
| Mean single sequence MFE | -33.72 |
| Consensus MFE | -21.70 |
| Energy contribution | -23.23 |
| Covariance contribution | 1.53 |
| Combinations/Pair | 1.31 |
| Mean z-score | -1.37 |
| Structure conservation index | 0.64 |
| SVM decision value | 0.29 |
| SVM RNA-class probability | 0.671817 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5803595 105 - 22224390 UAAUGAAGUAGGCGGUUGGCAACAGCGUACGUUUGGCAUUAAGAAACAGGACCAGUGGGCGUGGUCACUGGUGAAAUCUGGUCAAAUGCUUGAAGCCGCCGAGAC ..........((((((((....)..((..((((((((....(((......((((((((......))))))))....))).))))))))..)).)))))))..... ( -35.10) >DroSec_CAF1 9119 105 - 1 UAAUCAAGUGGGCGGUUGGCAACAGCGUACGUUUGGCAUUAAAAAACAGGACCAGUGGGCGUGGUCACUGGUGAAAUCUGGUCAAAUACUGGAAUCCGCCGAGAC ..........((((((((....))))....(((((((.........(((((((((....).))))).)))..........))))))).........))))..... ( -30.91) >DroSim_CAF1 9606 105 - 1 UAAUCAAGUGGGCGGUUGGCAACAGCGUACGUUCGGCAUCAAGAAACAGGACCAGUGGGCGUGGUCCCUGGUGAAAUCUGGUCAAAUACUGGAAUCCGCCGAGAC .......(((.((...((....)))).))).((((((.............(((((.((((...)))))))))....((..((.....))..))....)))))).. ( -32.40) >DroEre_CAF1 8767 105 - 1 UAAUCAAGUGGGCGGUUGGCAACAACGCACGUUUGGCAUUAAGAAACAGGACCAGUGGGCGUGGCCAUUGGUGAAAUCUGGCCAAACACUGGAGUCCGCCGAGAC .......((((((.((((....))))....(((((((....(((......((((((((......))))))))....))).)))))))......))))))...... ( -39.30) >DroYak_CAF1 9434 105 - 1 UAAUCCAGUGGGCGGUUGGCAGCAACGCACGUUUGGCAUUAAGAAGCAGGGCCAGUGGGCGUGGUCAUUGAUAAAAUCGGGCCAAAUACUGGAAUCCGAUGAAAC ...((((((..(((.(((....))))))..(((((((.........(((((((((....).))))).)))..........)))))))))))))............ ( -29.51) >DroMoj_CAF1 11779 102 - 1 CGCCCACAUCGAGGGCUGGCAGCAACGCACCUACGGCCACAUGGCCGACUUCCAAUGGUCCUGGCCACUGAUACGCUCUGGCCAGCAGCUAA---CCACCUCCAC .((((.......))))(((.(((...........((((....))))((((......))))(((((((..(.....)..)))))))..)))..---)))....... ( -35.10) >consensus UAAUCAAGUGGGCGGUUGGCAACAACGCACGUUUGGCAUUAAGAAACAGGACCAGUGGGCGUGGUCACUGGUGAAAUCUGGCCAAAUACUGGAAUCCGCCGAGAC ..........((((((((....))))....(((((((....(((......((((((((......))))))))....))).))))))).........))))..... (-21.70 = -23.23 + 1.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:27:10 2006