Locus 2140

Sequence ID X_DroMel_CAF1
Location 5,802,453 – 5,802,547
Length 94
Max. P 0.847548
window3473

overview

Window 3

Location 5,802,453 – 5,802,547
Length 94
Sequences 6
Columns 100
Reading direction forward
Mean pairwise identity 72.22
Mean single sequence MFE -31.88
Consensus MFE -21.64
Energy contribution -22.25
Covariance contribution 0.61
Combinations/Pair 1.15
Mean z-score -1.23
Structure conservation index 0.68
SVM decision value 0.78
SVM RNA-class probability 0.847548
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 5802453 94 + 22224390
ACAUCUGUUCGGGCGCUUUAGUGGCGCCCUCUGUUGUGCUAACCGUCACUAGCUGCAUCUUCAGGUGAGUUGAGUAAAAUUUGUAUCUUUUUA------U
.((((((...(((((((.....)))))))..(((...((((........)))).)))....))))))..........................------. ( -26.00)
>DroPse_CAF1 35464 98 + 1
ACAUCUGCUCGGGGGCCCUGGUGGCGCCCUCGGUGGUGCUCACGGUGAGCAGCUGCCUCUACAGGUGAGUGCAGGGCCAG--GAGUCCUGUCAGAGGGGA
.((((((...((((((((....)).))))))((..((((((.....))))).)..))....))))))...(((((((...--..)))))))......... ( -44.90)
>DroSec_CAF1 7959 94 + 1
ACAUCUGUUCGGGCGCUUUAGUGGCGCCCUCUGUUGUGCUGACCGUGACUAGCUGCAUCUUCAGGUGAGAUUUGUUAAAUUUGUAUAUUUUCA------U
.((((((...(((((((.....)))))))..(((...((((........)))).)))....))))))..........................------. ( -25.70)
>DroSim_CAF1 8458 94 + 1
ACAUCUGUUCGGGCGCUUUAGUGGCGCCAUCUGUUGUGCUGACCGUCACUAGCUGCAUCUUCAGGUGAGAUUUGUUACAUUUGUAUCUUUUCA------U
.((((((....((((((.....))))))...(((...((((........)))).)))....)))))).((...(.(((....))).)...)).------. ( -24.30)
>DroEre_CAF1 7609 72 + 1
ACAUCUGCUCGGGCGCCUUAGUGGCGCCCUCUGUUGUGCUGACCGUCAGUAGCUGCAUCUUCAGGUAAGGAU----------------------------
..(((((...(((((((.....)))))))..(((.((((((.....))))).).)))....)))))......---------------------------- ( -26.80)
>DroPer_CAF1 23339 98 + 1
ACAUCUGCUCGGGGGCCCUGGUGGCGCCCUCGGUGGUGCUCACGGUGAGCAGCUGCGUCUACAGGUGAGUGCAGGGCCAG--GAGUCCUGUCAGAGGGGA
.((((((..(((((((((....)).)))))))(..((((((.....))))).)..).....))))))...(((((((...--..)))))))......... ( -43.60)
>consensus
ACAUCUGCUCGGGCGCCUUAGUGGCGCCCUCUGUUGUGCUGACCGUCACUAGCUGCAUCUUCAGGUGAGUUUAGUGACAU__GUAUCUUUUCA______U
.((((((...(((((((.....)))))))..(((...((((........)))).)))....))))))................................. (-21.64 = -22.25 +   0.61)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:27:09 2006