Locus 2138

Sequence ID X_DroMel_CAF1
Location 5,801,008 – 5,801,119
Length 111
Max. P 0.679046
window3470

overview

Window 0

Location 5,801,008 – 5,801,119
Length 111
Sequences 6
Columns 114
Reading direction reverse
Mean pairwise identity 81.68
Mean single sequence MFE -29.35
Consensus MFE -16.69
Energy contribution -16.30
Covariance contribution -0.39
Combinations/Pair 1.17
Mean z-score -2.33
Structure conservation index 0.57
SVM decision value 0.30
SVM RNA-class probability 0.679046
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 5801008 111 - 22224390
-GUUACUUACUCGUUUGCAUUUCAGUGCAUAGAAAUGCGAAGAUCAGCGUCUUCACAAUCUUUCGCCAAUGAUCGUUCAAUUGCAUUUCGAUGCAAGAUAU--CCGUAACACAA
-(((((.......((((((((..((((((..((((((.((((((....)))))).))...)))).....(((....)))..))))))..))))))))....--..))))).... ( -28.12)
>DroPse_CAF1 34202 110 - 1
-AGCACUUACUCGUCUGCAUCUCGGUGCACAGGAAUGCAAAGAUCAGUAUCUUCAUGAUCUUGCGAUAAUGAUCGUUCAGCUGCAUUUCGAUCGAUGUU-U--AAGUCGCACAA
-.(((((((..(((((((((....)))))..(((((((((((((((.........)))))))(((((....))))).....))))))))....))))..-)--)))).)).... ( -36.10)
>DroSec_CAF1 6535 114 - 1
AGUUACUUACUCGUUUGCAUUUCAGUGCAUAGAAAUGCGAAGAUCAGCGUCUUCACAAUCCUUCGCCAAUGAUCGUUGAAUUGCAUUUUGAAGCAAGUUAUACGCGUAACACAA
.(((((.......((((((((((........))))))))))((((((((..............)))...)))))(((((.((((........)))).))).))..))))).... ( -26.64)
>DroSim_CAF1 7043 113 - 1
-GUUACUUACUCGUUUGCAUUUCAGUGCAUAGAAAUGCGAAGAUCAGCGUCUUCACAAUCUUUCGCCAAUGAUCGUUGAAUUGCAUUUUGCAGCAAGUUAUACGCGUAACACAA
-(((((.......((((((((((........))))))))))((((((((..............)))...)))))(((((.((((........)))).))).))..))))).... ( -26.44)
>DroEre_CAF1 6231 111 - 1
-UUUACUUACUCGUUUGCAUUUCAGUGCAUAGAAAUGCGAAGAUCAACGUCUUCACGAUCUUUCGCCAAUGAUCGUUCAACUGCAUUUCGAAGAAACUUGU--CCACAACACAA
-...........((((((((....))))...(((((((((((((....))))))((((((..........))))))......)))))))....))))....--........... ( -26.50)
>DroPer_CAF1 22073 110 - 1
-AGCACUUACUCGUCUGCAUCUCGGUGCACAGGAAUGCAAAGAUCAGUAUCUUCAUGAUCUUGCGAUAAUGAUCGUUCAGCUGCAUGUCGAUCGAUGUU-U--AAGUCGCACAA
-.(((((((..(((((((((....)))))..(..((((((((((((.........)))))))(((((....))))).....)))))..)....))))..-)--)))).)).... ( -32.30)
>consensus
_GUUACUUACUCGUUUGCAUUUCAGUGCAUAGAAAUGCGAAGAUCAGCGUCUUCACAAUCUUUCGCCAAUGAUCGUUCAACUGCAUUUCGAAGCAAGUUAU__ACGUAACACAA
...............(((((....)))))..(((((((((((((....))))))((.(((..........))).))......)))))))......................... (-16.69 = -16.30 +  -0.39)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:27:07 2006