| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 5,800,438 – 5,800,534 |
| Length | 96 |
| Max. P | 0.923325 |
| Location | 5,800,438 – 5,800,534 |
|---|---|
| Length | 96 |
| Sequences | 3 |
| Columns | 96 |
| Reading direction | forward |
| Mean pairwise identity | 85.45 |
| Mean single sequence MFE | -14.27 |
| Consensus MFE | -11.58 |
| Energy contribution | -12.25 |
| Covariance contribution | 0.67 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.55 |
| Structure conservation index | 0.81 |
| SVM decision value | 1.15 |
| SVM RNA-class probability | 0.923325 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5800438 96 + 22224390 AGACUUAAACCGAUCGAAUCCACACACACACACACACACUGUAAUCCUGGCUUCACAGCAUAAACAAAUUCACCCGAAUACGUGUGAAUUAAAAUA ...............(((.(((.....(((.........))).....))).)))............(((((((.((....)).)))))))...... ( -11.30) >DroSec_CAF1 5988 83 + 1 AUACUUAAAACGA-------------CACACACACACACCGUAAUCCUGGCUUCAUAGCAUAAACAAAUUCGCCGGAAUACGUGUGAAUUAAAAUA .............-------------........(((((.(((.(((.(((....................)))))).)))))))).......... ( -15.75) >DroSim_CAF1 6489 83 + 1 AUACCUAAAACGA-------------CACACACACACACCGUAAUCCUGGCUUCACAGCAUAAACAAAUUCGCCGGAAUACGUGUGAAUUAAAAUA .............-------------........(((((.(((.(((.(((....................)))))).)))))))).......... ( -15.75) >consensus AUACUUAAAACGA_____________CACACACACACACCGUAAUCCUGGCUUCACAGCAUAAACAAAUUCGCCGGAAUACGUGUGAAUUAAAAUA ..................................(((((.(((.(((.(((....................)))))).)))))))).......... (-11.58 = -12.25 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:27:06 2006