Locus 2134

Sequence ID X_DroMel_CAF1
Location 5,792,272 – 5,792,392
Length 120
Max. P 0.957524
window3465

overview

Window 5

Location 5,792,272 – 5,792,392
Length 120
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 79.17
Mean single sequence MFE -31.07
Consensus MFE -21.27
Energy contribution -22.94
Covariance contribution 1.67
Combinations/Pair 1.10
Mean z-score -2.20
Structure conservation index 0.68
SVM decision value 1.48
SVM RNA-class probability 0.957524
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 5792272 120 + 22224390
GGAACAGUAUGCUUCUUCUGAAGAUGAGGAUGCUUCUUCUAAAGAUGCGUAUACUUCUUCUAAAUAUGAGGAUGCUUCUUCUAAAGAUGAGGAUGCUUCUUCUAAAGAUGAUGAUGCCUC
((....((((((.((((..(((((.(......).)))))..)))).))))))...((.((.......(((((.((.(((((.......))))).)).))))).......)).))..)).. ( -31.64)
>DroSec_CAF1 8397 99 + 1
GGAACAGUAUGCUUUUUCUAUAGAUGAGGAUGCUUCUUCUGAAGAUGAGGAUAGUUCUUCUAAUGAUGAAGAUGCUCCUUCUAAAGUUGAGGA---------------------UGAAUA
.......(((.(((...((.((((..((((.((.(((((.......(((((....))))).......))))).)))))))))).))..))).)---------------------)).... ( -25.54)
>DroSim_CAF1 9605 120 + 1
GGAACAGUAUGCUUCUUCUAUAGAUGAGGAUGCUUCUUCUGAAGAUGAGGAUAGUUCUUCUAAUGAUGAAGAUGCUCCUUCUAAAGUUGAGGAUGCUGCUUCUAAAUAUGACGAUGACUA
((((((((((.((((..((.((((..((((.((.(((((.......(((((....))))).......))))).)))))))))).))..)))))))))).))))................. ( -36.04)
>consensus
GGAACAGUAUGCUUCUUCUAUAGAUGAGGAUGCUUCUUCUGAAGAUGAGGAUAGUUCUUCUAAUGAUGAAGAUGCUCCUUCUAAAGUUGAGGAUGCU_CUUCUAAA_AUGA_GAUGACUA
.....(((((.((((..((.((((..((((.((.(((((.......(((((....))))).......))))).)))))))))).))..)))))))))....................... (-21.27 = -22.94 +   1.67)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:27:02 2006