Locus 2132

Sequence ID X_DroMel_CAF1
Location 5,783,394 – 5,783,484
Length 90
Max. P 0.624802
window3463

overview

Window 3

Location 5,783,394 – 5,783,484
Length 90
Sequences 4
Columns 90
Reading direction reverse
Mean pairwise identity 93.89
Mean single sequence MFE -24.12
Consensus MFE -19.01
Energy contribution -20.82
Covariance contribution 1.81
Combinations/Pair 1.03
Mean z-score -1.96
Structure conservation index 0.79
SVM decision value 0.19
SVM RNA-class probability 0.624802
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 5783394 90 - 22224390
GCUUUUUUUCAUGCCAGGAGCAUUAUAUAUCCGCCGAUGAACUUGUUAUCCCUACGAAUCCUUUUCACAGUGCGUCGGUGGUGUGUAAAU
((((((.........)))))).(((((((.(((((((((.(((.((.......))(((.....)))..))).)))))))))))))))).. ( -25.50)
>DroSec_CAF1 51085 90 - 1
GCUUUUUGUCAUGCCAGGAGCAUUAUAUAUCCGCCGAUGAACUUGUUAUCCCUACGAAUCCUUUUCACAGUGCGUCGGUGGUGUGUAAAU
((((((.(.....).)))))).(((((((.(((((((((.(((.((.......))(((.....)))..))).)))))))))))))))).. ( -27.30)
>DroSim_CAF1 42785 90 - 1
GCUUUUUGUCAUGCCAGGAGCAUUAUAUAUCCGCCGAUGAACUUGUUAUCCCUACGAAUCCUUUUCACAAUGCGUCGGUGGUGUGUAAAU
((((((.(.....).)))))).(((((((.(((((((((...((((.........(((.....)))))))..)))))))))))))))).. ( -26.00)
>DroEre_CAF1 52134 85 - 1
GCUUUUUGUCCUGCCAGCAGCACUA--UAUCCGCCGAUGAACUUGUUAUCCCUAUGAAUCCUUUUCACAGUGCGUCGG---UGUGUAAAU
.......((.(((....))).))..--((..((((((((.(((.((.........(((.....)))))))).))))))---))..))... ( -17.70)
>consensus
GCUUUUUGUCAUGCCAGGAGCAUUAUAUAUCCGCCGAUGAACUUGUUAUCCCUACGAAUCCUUUUCACAGUGCGUCGGUGGUGUGUAAAU
((((((.(.....).)))))).(((((((.(((((((((...((((.........(((.....)))))))..)))))))))))))))).. (-19.01 = -20.82 +   1.81)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:27:00 2006