Locus 2131

Sequence ID X_DroMel_CAF1
Location 5,781,445 – 5,781,554
Length 109
Max. P 0.611397
window3462

overview

Window 2

Location 5,781,445 – 5,781,554
Length 109
Sequences 4
Columns 112
Reading direction reverse
Mean pairwise identity 90.74
Mean single sequence MFE -27.25
Consensus MFE -19.96
Energy contribution -20.53
Covariance contribution 0.56
Combinations/Pair 1.10
Mean z-score -1.84
Structure conservation index 0.73
SVM decision value 0.16
SVM RNA-class probability 0.611397
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 5781445 109 - 22224390
AACACGAAAUUGGGUAGAAAAACCGCCGAAGAAAGGACUUCUUUGGCUAG--UACAUAAAAGAAUGCCAUAUGUACCGGUUU-UUUAUGUGCAACCGCCGUUUGAUUGAUAU
....((((....(((.........(((((((((.....)))))))))..(--((((((((((...(((.........)))))-))))))))).)))....))))........ ( -28.90)
>DroSec_CAF1 49109 108 - 1
AA--CGAAAUUGGGUAGAAAAACCGCCGAAGAAAGGACUUCUUUGGCUAG--UACAUAAAAGAAUGCCAUAUGUACCGGUUUUUUUAUGUGCAGCCGCCGUUUGAUUGAUAU
((--((.....(.((((((((((((((((((((.....)))))))))..(--((((((...........))))))).))))))))))).)((....)))))).......... ( -30.90)
>DroEre_CAF1 50219 106 - 1
AA--CGAAAUUGGGUAGAAAAAACCCCGAAGAAAGGACUUCUUUGGCUAG--UAUAUAAAAGAAUGCCAUAUGUACCGGUUUUUUU-UGUGCUGCUA-UGUUUGAUUGAUAU
..--((((....(((((((((((((((((((((.....))))))))...(--((((((...........))))))).)))))))).-....))))).-..))))........ ( -23.90)
>DroYak_CAF1 53561 107 - 1
AA--CGAAAUUGGGUAGAAAAACCCACGAAGAAAGGACUUCUUUGGCUAGUGUAUAUAAAAGAGUGCCAUAUGUACCGGUUUUUUUAUGUGCAACCA---UUUGAUUGAUAU
..--((((..(((((......)))))(((((((.....))))))).....(((((((((((((..(((.........))))))))))))))))....---))))........ ( -25.30)
>consensus
AA__CGAAAUUGGGUAGAAAAACCCCCGAAGAAAGGACUUCUUUGGCUAG__UACAUAAAAGAAUGCCAUAUGUACCGGUUUUUUUAUGUGCAACCA_CGUUUGAUUGAUAU
....((((....(((.........(((((((((.....))))))))).....(((((((((((..(((.........))))))))))))))..)))....))))........ (-19.96 = -20.53 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:26:59 2006