Locus 2130

Sequence ID X_DroMel_CAF1
Location 5,779,983 – 5,780,090
Length 107
Max. P 0.997350
window3461

overview

Window 1

Location 5,779,983 – 5,780,090
Length 107
Sequences 6
Columns 114
Reading direction forward
Mean pairwise identity 90.99
Mean single sequence MFE -19.34
Consensus MFE -18.72
Energy contribution -18.61
Covariance contribution -0.11
Combinations/Pair 1.10
Mean z-score -1.89
Structure conservation index 0.97
SVM decision value 2.84
SVM RNA-class probability 0.997350
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 5779983 107 + 22224390
GAUGACAGGUUCACAUAUAAAUUCCGUACUCUCCUUUU--UUUACAUUCCGUUCUUUUUU-----UUUUGUUGUAUGGAAAACUGUGUACCUUUCAUUUAACUUGACAUGAAAA
(((((.((((.((((......((((((((.........--....................-----.......))))))))...)))).)))).)))))................ ( -19.42)
>DroSec_CAF1 47549 104 + 1
GAUGACAGGUUCACAUAUAAAUUCCGUACUCUCCUUUU--UUUACAUUCCGUUCUUUUU--------UUUUUGUAUGGAAAACUGUGUACCUUUCAUUUAACUUGACAUGAAAA
(((((.((((.((((......((((((((.........--...((.....)).......--------.....))))))))...)))).)))).)))))................ ( -20.65)
>DroSim_CAF1 40000 112 + 1
GAUGACAGGUUCACAUAUAAAUUCCGUACUCUCCUUUU--UUUACAUUCCGUUCUUUUUUUUUUUUUUUUUUGUAUGGAAAACUGUGUACCUUUCAUUUAACUUGACAUGAAAA
(((((.((((.((((......((((((((.........--................................))))))))...)))).)))).)))))................ ( -19.28)
>DroEre_CAF1 48639 111 + 1
GAUGACAGGUUCACAUAUAAAUUCCGUACUCUCCUUUU--UUAACAUUCCGUUUUUUUUUUUUUG-UUUGUUGUAUGGAGAACUGUGUACCUUUCAUUUAACUUGACAUGAAAA
(((((.((((.((((......((((((((.........--.........................-......))))))))...)))).)))).)))))................ ( -19.00)
>DroYak_CAF1 51904 112 + 1
GAUGACAGGUUCACAUAUAAAUUCCGUACUCUCCUUUU--UUUACAUUCCGUCUUUUUUUUUGUACGUUGUUGUAUGGAAAACUGUGUACCUUUCAUUUAACUUGACAUGAAAA
(((((.((((.((((......((((((((.........--...(((...((((.........).))).))).))))))))...)))).)))).)))))................ ( -20.62)
>DroAna_CAF1 54135 110 + 1
CAUGACAGGUCCACAUAUAAAUUCCGUAUUCUCCUUUUUUUUUACAUUCCUCUUUUUUUU-U---UUGUGUUGUAUGGAAAACUGUGUACCUUUCAUUUAAGUUGACAUGAAAA
.((((.((((.((((......((((((((..............((((.............-.---..)))).))))))))...)))).)))).))))................. ( -17.05)
>consensus
GAUGACAGGUUCACAUAUAAAUUCCGUACUCUCCUUUU__UUUACAUUCCGUUCUUUUUU_U___UUUUGUUGUAUGGAAAACUGUGUACCUUUCAUUUAACUUGACAUGAAAA
(((((.((((.((((......((((((((...........................................))))))))...)))).)))).)))))................ (-18.72 = -18.61 +  -0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:26:58 2006