Locus 213

Sequence ID X_DroMel_CAF1
Location 761,399 – 761,498
Length 99
Max. P 0.946699
window323

overview

Window 3

Location 761,399 – 761,498
Length 99
Sequences 5
Columns 107
Reading direction reverse
Mean pairwise identity 81.19
Mean single sequence MFE -34.51
Consensus MFE -15.37
Energy contribution -16.25
Covariance contribution 0.88
Combinations/Pair 1.16
Mean z-score -2.86
Structure conservation index 0.45
SVM decision value 1.36
SVM RNA-class probability 0.946699
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 761399 99 - 22224390
GGC-------AGCUCAAGACGAUUUUAUUUUUGUUUUUCGCUGCCCACUUUCCUCGUCCUCUUGGUCAUGCUCUUGC-CUGGCUAUAUGCCGGGCCAGACGUGGCCG
(((-------(((..(((((((........)))))))..))))))..................(((((((.(((.((-(((((.....))))))).)))))))))). ( -45.20)
>DroSec_CAF1 76241 107 - 1
GGCAAAAAGCAGCUCAAGACGAUUUCAUUUUUGUUUUUCGCUGCCCACUUUCCUUGUCCUCUUGGUCUUGCUCUUGCUCUGGCUAUAUGCCGGGCCAGACGUGGCCG
(((.....(((((..(((((((........)))))))..))))).(((.......(.((....)).)....(((.((.(((((.....))))))).))).)))))). ( -36.00)
>DroSim_CAF1 39619 107 - 1
GGCAAAAAGCAGCUCAAGACGAUUUCAUUUUUGUUUUUCGCUGCCCACUUUCCUCGUCCUCUUGGUCUUGCUCUUGCUCUGGCUAUAUGCCGGGCCAGACGUGGCCG
(((.....(((((..(((((((........)))))))..))))).(((.......(.((....)).)....(((.((.(((((.....))))))).))).)))))). ( -36.30)
>DroEre_CAF1 91509 95 - 1
GGGAAAAAGCUGCUCAAGACGGUUUUAUUUUUGUUUCUCGCUGC-CACUUUGCUCGUCCUCCUGCUCCAGCUCUUUCC-----------CAGAGCCAGACGUGGUCG
((((((.(((((..((.((((((.........((.....))...-......)).))))....))...))))).)))))-----------).((.(((....))))). ( -22.57)
>DroYak_CAF1 80584 94 - 1
GGGAAAAAGCUGCUCAAGACGAUUUUAUUUUUGUUU-UCGCUGC-CACUUUCCUCGUCCUCUGGCUCCAGCUCUUUGC-----------CAGAGCCAGACGUGGCCG
((((((..((.((..(((((((........))))))-).)).))-...)))))).((((((((((((..((.....))-----------..)))))))).).))).. ( -32.50)
>consensus
GGCAAAAAGCAGCUCAAGACGAUUUUAUUUUUGUUUUUCGCUGCCCACUUUCCUCGUCCUCUUGGUCCUGCUCUUGCCCUGGCUAUAUGCCGGGCCAGACGUGGCCG
(((.....(((((..(((((((........)))))))..)))))........(.(((((....).....((((..................))))..)))).)))). (-15.37 = -16.25 +   0.88)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:08 2006