| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 5,769,885 – 5,769,975 |
| Length | 90 |
| Max. P | 0.897360 |
| Location | 5,769,885 – 5,769,975 |
|---|---|
| Length | 90 |
| Sequences | 4 |
| Columns | 92 |
| Reading direction | forward |
| Mean pairwise identity | 93.07 |
| Mean single sequence MFE | -15.27 |
| Consensus MFE | -13.57 |
| Energy contribution | -13.70 |
| Covariance contribution | 0.13 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.90 |
| Structure conservation index | 0.89 |
| SVM decision value | 1.00 |
| SVM RNA-class probability | 0.897360 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5769885 90 + 22224390 UUAUUUUGCGGUGUAUUAACUAGUAGGUAACUUCCUCUAUUUCCC--CCGAUUUCCCCUUUGAGAUUGUGCAAAGCAGCUUUUCCUUUUUCC .....((((..((((.....(((.(((......))))))......--.(((((((......)))))))))))..)))).............. ( -15.90) >DroSec_CAF1 42671 88 + 1 --UUUUUGCCGUGCAUUAACUAGUAGGUAACUUCCUCUAUUUCCC--CCGAUUUCCCCUUUGAGAUUGUGCAAAGCAGCUUUUCCUUUUUCC --...((((..((((.....(((.(((......))))))......--.(((((((......)))))))))))..)))).............. ( -17.00) >DroEre_CAF1 43561 91 + 1 UUUAUUUACCGUGCAUUAACUAGUAGGUAACUUCCUCUAUUUCCC-CGCAAUUUCCCCUUUGAGAUUGUGCAAAGCAGCUUUUCCUUUUUCC ...........(((......(((.(((......))))))......-(((((((((......)))))))))....)))............... ( -15.40) >DroYak_CAF1 45525 92 + 1 UUUUUUUUCUGUGCAUUAACUAGUAGGUAACUUCCUCUAUUUCCCCCCCGAUUUCCCCUUUGAGAUUGUGCAAAGCAGCUUUUCCUUUUUCC ........(((((((.....(((.(((......)))))).........(((((((......))))))))))...)))).............. ( -12.80) >consensus UUUUUUUGCCGUGCAUUAACUAGUAGGUAACUUCCUCUAUUUCCC__CCGAUUUCCCCUUUGAGAUUGUGCAAAGCAGCUUUUCCUUUUUCC .....((((..((((.....(((.(((......)))))).........(((((((......)))))))))))..)))).............. (-13.57 = -13.70 + 0.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:26:55 2006