Locus 2127

Sequence ID X_DroMel_CAF1
Location 5,766,748 – 5,766,853
Length 105
Max. P 0.640519
window3457

overview

Window 7

Location 5,766,748 – 5,766,853
Length 105
Sequences 5
Columns 110
Reading direction reverse
Mean pairwise identity 91.94
Mean single sequence MFE -25.52
Consensus MFE -20.72
Energy contribution -21.32
Covariance contribution 0.60
Combinations/Pair 1.07
Mean z-score -1.44
Structure conservation index 0.81
SVM decision value 0.22
SVM RNA-class probability 0.640519
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 5766748 105 - 22224390
UUUGUGCCAUUUUAGAGCAUGAUUUGUAGUUCGUUUCGUUUAGAUGGAAUUCCAAUCUGCUGGCGA-ACAAAAGGGUGGAAAUUUACGAAAAGAUUUCCAUAAGUU----
.(..((((......).)))..)......(((((((.....(((((((....)).)))))..)))))-))......((((((((((......)))))))))).....---- ( -26.70)
>DroSec_CAF1 39590 105 - 1
UUUGUGCCAUUCUAGAGCAUGAUUUGUAGUUCGUUUCGUUUAGAUGGAAUUCCAAUCUGCUGGCGA-ACAAAAGGGUGGAAAUUUACGAAAAGAUUUCCAUAAGUU----
.(..((((......).)))..)......(((((((.....(((((((....)).)))))..)))))-))......((((((((((......)))))))))).....---- ( -26.70)
>DroEre_CAF1 40445 104 - 1
UUUGUGCCAUUUUAGAGCAUGAUUUGUAGUUCGUUUCGU-UAGAUGGAAUUCCAAUCUGCUGGCAA-ACAAAAGGGUGGAAAUGUACGAAAAGAUUUCCAUAAGUU----
(((((((((.....(((.((((........)))))))..-(((((((....)).))))).))))..-)))))...((((((((.(......).)))))))).....---- ( -23.70)
>DroYak_CAF1 42198 104 - 1
UUUGUGCCAUUUUAGAGCAUGAUUUGUAGUUCGUUUCGU-UAGAUGGAAUUCCAAUCUGCUGGCGA-ACAAAAGGGUGGAAAUGUACGAAAAGAUUUCCAUAAGUU----
.(..((((......).)))..)......(((((((....-(((((((....)).)))))..)))))-))......((((((((.(......).)))))))).....---- ( -25.90)
>DroAna_CAF1 44081 107 - 1
UUUUUG-CGUUUUAGAACAUGAUUUGUAUUUCGU-UCGU-UAGAUGGAAUUCCAAUCUGCUGGCAAAACAAAAGGGUGGAAAUUCUCUAAAAGAUUUCCAUAAGGAACGA
....((-((..(((.....)))..))))..((((-((.(-((..((((((((((..((..((......))..))..)))))..(((.....))).)))))))).)))))) ( -24.60)
>consensus
UUUGUGCCAUUUUAGAGCAUGAUUUGUAGUUCGUUUCGU_UAGAUGGAAUUCCAAUCUGCUGGCGA_ACAAAAGGGUGGAAAUUUACGAAAAGAUUUCCAUAAGUU____
....(((((.....(((.((((........)))))))...(((((((....)).))))).)))))..........((((((((((......))))))))))......... (-20.72 = -21.32 +   0.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:26:54 2006