Locus 2124

Sequence ID X_DroMel_CAF1
Location 5,761,938 – 5,762,036
Length 98
Max. P 0.739949
window3451

overview

Window 1

Location 5,761,938 – 5,762,036
Length 98
Sequences 5
Columns 98
Reading direction forward
Mean pairwise identity 83.42
Mean single sequence MFE -19.72
Consensus MFE -12.28
Energy contribution -12.20
Covariance contribution -0.08
Combinations/Pair 1.13
Mean z-score -2.14
Structure conservation index 0.62
SVM decision value 0.45
SVM RNA-class probability 0.739949
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 5761938 98 + 22224390
CUAUCUCUUGGCCAGCAUCCAAAAUAUUCGACACCGAAAAUACAACGAAGCGAAAACACGCGUUACGUUGGUAAACAACAUUUACCAGGCUAACAGAU
..((((.((((((.............((((....)))).....((((.((((........)))).))))((((((.....)))))).)))))).)))) ( -24.30)
>DroSec_CAF1 34794 87 + 1
CUAUCUCUUGGCCAGCAUCCAAAAUAUUCGGCACCGAAAAUACAACGAAACGAAAACACGCGUUACGUUGGUAAACAACAUUU-----------AGAU
(((....(((((((((..........((((....))))........(.((((........)))).)))))))...)))....)-----------)).. ( -14.90)
>DroSim_CAF1 35664 87 + 1
CUAUCUCUUGGCCAGCAUCCAAAAUAUUCGGCACCGAAAAUACAACGAAACGAAAACACGCGUUACGUUGGUAAACAACAUUU-----------AGAU
(((....(((((((((..........((((....))))........(.((((........)))).)))))))...)))....)-----------)).. ( -14.90)
>DroEre_CAF1 35314 90 + 1
CUAUCUCUUGGCCAGCAUCCAAAAUAUUCGACUCCGAAAAUAC---GAUGUGCAAACACGCGUUGCGUUGGUAAACAACGUUUGC-----CAACAUUU
..............(((.........((((....))))...((---(.((((....))))))))))((((((((((...))))))-----)))).... ( -21.90)
>DroYak_CAF1 37111 94 + 1
UUAUCUCUUGGCCAGCAUCCAAAAUAUUCGACGCCGAAAAUAC---GAAAUGCAAACACGCGUUACGUCGGUAAACAACAUUUGCUAG-CCGACUUAA
.......(((((.((((..........((((((.((......)---).(((((......))))).))))))...........)))).)-))))..... ( -22.60)
>consensus
CUAUCUCUUGGCCAGCAUCCAAAAUAUUCGACACCGAAAAUACAACGAAACGAAAACACGCGUUACGUUGGUAAACAACAUUU_C_______ACAGAU
..........((((((..........((((....))))........(.((((........)))).))))))).......................... (-12.28 = -12.20 +  -0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:26:49 2006