Locus 2122

Sequence ID X_DroMel_CAF1
Location 5,744,465 – 5,744,564
Length 99
Max. P 0.992271
window3446

overview

Window 6

Location 5,744,465 – 5,744,564
Length 99
Sequences 4
Columns 104
Reading direction reverse
Mean pairwise identity 85.06
Mean single sequence MFE -17.43
Consensus MFE -17.67
Energy contribution -17.30
Covariance contribution -0.37
Combinations/Pair 1.23
Mean z-score -2.11
Structure conservation index 1.01
SVM decision value 2.32
SVM RNA-class probability 0.992271
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 5744465 99 - 22224390
CUGCCCCG-----CACCCCUUUCCUUCCACUACCGUUUUGCCGCAUUUGGUAUUGCCAUCUCGCUUUUUUGGCUUUACUUUGCUUUUUGAAUAAGCCAAGAAAC
........-----.....................((..(((((....)))))..))........(((((((((((.................))))))))))). ( -15.83)
>DroSec_CAF1 17338 99 - 1
CUGCCCCG-----CACCCCUCUCCAUCCCCUACCGUUUUGCCGCAUUCGGUAUUGCCAUCUCGCUUUUUUGGCUUUAUUUCGCCCUUUGAUUAAGCCAAGAAAC
........-----.....................((..(((((....)))))..))........(((((((((((....(((.....)))..))))))))))). ( -18.80)
>DroSim_CAF1 17886 99 - 1
CUGCCCCG-----CACCCCUCUCCAUCCUCUACCGUUUUGCCGCAUUUGGUAUUGCCAUCUCGCUUUUUUGGCUUUAUUUCGCUUUUUGAUUAAGCCAAGAAAC
........-----.....................((..(((((....)))))..))........(((((((((((....(((.....)))..))))))))))). ( -17.50)
>DroEre_CAF1 17694 100 - 1
CUCCCCCAUUCCUCCCCCCUCUUCGUCACCAUCCGUUUUGCCGCAUUUGGUAUUGCCAUC----UUUUUUGGCUUUAUUUUGCUUUUCGAGUAAGCCAAAAAAU
..................................((..(((((....)))))..))....----(((((((((((...((((.....)))).))))))))))). ( -17.60)
>consensus
CUGCCCCG_____CACCCCUCUCCAUCCCCUACCGUUUUGCCGCAUUUGGUAUUGCCAUCUCGCUUUUUUGGCUUUAUUUCGCUUUUUGAUUAAGCCAAGAAAC
..................................((..(((((....)))))..))........(((((((((((...((((.....)))).))))))))))). (-17.67 = -17.30 +  -0.37)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:26:44 2006