Locus 2118

Sequence ID X_DroMel_CAF1
Location 5,737,511 – 5,737,625
Length 114
Max. P 0.634516
window3442

overview

Window 2

Location 5,737,511 – 5,737,625
Length 114
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 86.96
Mean single sequence MFE -29.38
Consensus MFE -22.20
Energy contribution -22.32
Covariance contribution 0.12
Combinations/Pair 1.12
Mean z-score -1.66
Structure conservation index 0.76
SVM decision value 0.21
SVM RNA-class probability 0.634516
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 5737511 114 + 22224390
AGAAUUGAUAUAAAUCUUCUAUCUUACAUUGUAUUUUUUUGGCGAGUGUACUAUCUUGCUACUUUGUUGAGAGGCAGGUGCUU------GUGCUUUUCAAGCGAUCGCCAAACGGUUUCC
.((((((((((((...............))))))...((((((((.........((((((.(((....))).))))))(((((------(.......)))))).)))))))))))))).. ( -27.56)
>DroSec_CAF1 10539 113 + 1
AGAAUUUAUAGAAAUCUUCUAUCUUACAUUGUAUUU-UUUGGCGAGUGUACUAUCUCUCUACUUUGUUGAGAGGCAGGUGCUU------GUGCUUUUCAAGCGAUCGCCAAACGGUUUCC
..........((((((........(((...)))...-((((((((.....((..(((((.........)))))..)).(((((------(.......)))))).)))))))).)))))). ( -29.80)
>DroSim_CAF1 11115 113 + 1
AGAGUUUAUACAAAUCUUCUAUCUUACAUUGUAUUU-UUUGGCGAGUGUACUAUCUCACUACUUUGUUGAGAGGCAGGUGCUU------GUGCUUUUCAAGCGAUCGCCAAACGGUUUCC
.......((((((...............))))))..-(((((((((((........)))....(((((((((((((.(....)------.)))))))).)))))))))))))........ ( -26.76)
>DroEre_CAF1 10824 113 + 1
CACAUUGAAAAAAAUCUUACAUUUCAUGUUGAUUUU-UUUGGCGAGUGUACUAUCUCUCCACAUUGUUGAGAGGCAGGUGCUU------GUGCUUUUCAAGCAAUCGCCAAACGGUUUCC
...(((((((((((((..((((...)))).))))))-)))(((((.....((..(((((.((...)).)))))..)).(((((------(.......)))))).)))))...)))).... ( -31.70)
>DroYak_CAF1 11892 119 + 1
CGAAUCGAAAUAAAUCUUCAAUCUAAGAUUGUAUUU-UUCGGCGAGUGUACUAUCUCUCUACAUUGUUGGGAGGCAGGUGCUUGUGCUUGUGCUUUUGAAGCAAUCGCCAAACGGUUUCC
.(((((((((((((((((......)))))).)))))-...(((((.(((.....(((((.........)))))(((((((....))))))).........))).)))))...)))))).. ( -31.10)
>consensus
AGAAUUGAUAUAAAUCUUCUAUCUUACAUUGUAUUU_UUUGGCGAGUGUACUAUCUCUCUACUUUGUUGAGAGGCAGGUGCUU______GUGCUUUUCAAGCGAUCGCCAAACGGUUUCC
.....................................((((((((..(((((.((((((.((...)).))))))..))))).........((((.....)))).))))))))........ (-22.20 = -22.32 +   0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:26:40 2006