Locus 2117

Sequence ID X_DroMel_CAF1
Location 5,735,763 – 5,735,861
Length 98
Max. P 0.877087
window3441

overview

Window 1

Location 5,735,763 – 5,735,861
Length 98
Sequences 5
Columns 118
Reading direction forward
Mean pairwise identity 81.99
Mean single sequence MFE -30.10
Consensus MFE -16.33
Energy contribution -17.25
Covariance contribution 0.92
Combinations/Pair 1.12
Mean z-score -2.51
Structure conservation index 0.54
SVM decision value 0.90
SVM RNA-class probability 0.877087
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 5735763 98 + 22224390
CUCGAUCAUUUUCAUCUUUUGUGGCAUUGUCCGUUUUGCCGUUUUCAUGCGAACAAACGUACGGACGGACG--------GACAACAAAAACAAUUUUUGCCAUUUG------------
...((......)).......((((((((((((((((..((((......(((......)))))))..)))))--------))))).............))))))...------------ ( -24.71)
>DroSec_CAF1 8820 102 + 1
CUCGAUCAUUUUCAUCUUUUGUGGCAUUGUCCGU-UUGCCGUUUUCAUGCGCACAAACG----GACGGACG--------GACAAC---AACGAAUUUUGCCAUUUGAAAUGCAAGGGA
(((...(((((.((......((((((((((((((-(((((((((..........)))))----).))))))--------))))).---.........)))))).)))))))...))). ( -32.80)
>DroSim_CAF1 9420 95 + 1
CCCGAUCAUUUUCAUCUUUUGUGGCAUUGUCCGU-UUGCCGUUUUCAUGCGAACAAACG----GACGGA---------------C---AACGAAUUUUGCCAUUUGAAAUGCAAGGGA
(((...(((((.((......((((((..((((((-(((.(((......)))..))))))----)))(..---------------.---..)......)))))).)))))))...))). ( -30.70)
>DroEre_CAF1 9188 110 + 1
CUCGAUCAUUUUCAUCUUUUGUGGCAUUGUCCGU-UUGCCGUUUUCAUGUGAACAAACG----GACGGACAAACGAACGGACAAC---AGCGAAUUGUGCCAUUUGAAAUGCACGGGA
((((..(((((.((......((((((((((((((-(((((((((...((....))...)----))))).....))))))))))..---........))))))).)))))))..)))). ( -34.40)
>DroYak_CAF1 10174 102 + 1
CUCGAUCAUUUUCAUCUUUUAUGGCAUUGUCCGU-UUGCCGUUUUCAUGCGAACAAACG----GACGGACAAA--------CAAC---AACGAAUUGUGCCAUUUAAAAUGCAAGGUA
.......((((((((.((..(((((.((((((((-(((.(((......)))..))))))----))))).....--------..((---((....)))))))))..)).))).))))). ( -27.90)
>consensus
CUCGAUCAUUUUCAUCUUUUGUGGCAUUGUCCGU_UUGCCGUUUUCAUGCGAACAAACG____GACGGACA________GACAAC___AACGAAUUUUGCCAUUUGAAAUGCAAGGGA
............(((.((..((((((.(((((((.....(((((((....))..))))).....)))))))..........................))))))..)).)))....... (-16.33 = -17.25 +   0.92)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:26:39 2006