| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 5,731,348 – 5,731,451 |
| Length | 103 |
| Max. P | 0.820031 |
| Location | 5,731,348 – 5,731,451 |
|---|---|
| Length | 103 |
| Sequences | 3 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 81.76 |
| Mean single sequence MFE | -20.97 |
| Consensus MFE | -14.34 |
| Energy contribution | -14.90 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.09 |
| Mean z-score | -2.08 |
| Structure conservation index | 0.68 |
| SVM decision value | 0.68 |
| SVM RNA-class probability | 0.820031 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5731348 103 + 22224390 CUAAUAUCUACAAAAACACGUAUGGAUAAGCGAUUUUCUUU-----------UUCAUUUAAUAAAGAAAUAUCUGUAAGUCCUUCGAGUUACAGAAAAUGCUUUAUACGAGGCU ..................((((((...(((((..(((((((-----------..........)))))))..(((((((.((....)).)))))))...)))))))))))..... ( -21.60) >DroSec_CAF1 4581 101 + 1 CUGAUAUCCUCAAAA-------------AGCGAAUUUCUUUUCUGCAAUACUUUCAUUUAAUAAGGAAAUAUCUGUAAGUCCUUCAAGUUACAGAAAAUGCUUUAUACGAGGCU .......((((....-------------.(((((......))).))..............((((((.....(((((((.(......).))))))).....))))))..)))).. ( -19.20) >DroSim_CAF1 5398 101 + 1 CUGAUAUCCUCAAAA-------------AGCGAAUUUCUUUUCUGCAAUACUUUCAUUUAAUAAGGAAAUAUCUGUAAGUCCUUCGAGUUACAGAAAAUGCUUUAUACGAGGCU .......((((....-------------.(((((......))).))..............((((((.....(((((((.((....)).))))))).....))))))..)))).. ( -22.10) >consensus CUGAUAUCCUCAAAA_____________AGCGAAUUUCUUUUCUGCAAUACUUUCAUUUAAUAAGGAAAUAUCUGUAAGUCCUUCGAGUUACAGAAAAUGCUUUAUACGAGGCU .......((((....................(((..................))).....((((((.....(((((((.((....)).))))))).....))))))..)))).. (-14.34 = -14.90 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:26:33 2006