| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 5,724,636 – 5,724,730 |
| Length | 94 |
| Max. P | 0.621314 |
| Location | 5,724,636 – 5,724,730 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 76.11 |
| Mean single sequence MFE | -33.44 |
| Consensus MFE | -20.27 |
| Energy contribution | -21.81 |
| Covariance contribution | 1.53 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.41 |
| Structure conservation index | 0.61 |
| SVM decision value | 0.18 |
| SVM RNA-class probability | 0.621314 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5724636 94 + 22224390 CUCCGACUACGGCGGCUACCGUCACUCCGGCGGCCAUUAGAAUCUUCUCGCUCUCCAUGGCUUGAGAUUUCCGAUGGCUGGUUUUCCGGUGCAG--------------------- ..........(((((...))))).(.(((((((((((..(((...(((((((......)))..)))).)))..))))))).....)))).)...--------------------- ( -31.30) >DroSec_CAF1 1830 94 + 1 CUCCGACUACGGCGGCUACCGUCACUCCGGCGGCCAUUAGAAUCUUCUCGCUCUCCAUGGCUUAAGAUUUCUGAUGGCUGCUUUUCCGGUGCAG--------------------- ..(((.....(((((...))))).....((((((((((((((((((...(((......)))..)))).))))))))))))))....))).....--------------------- ( -35.50) >DroSim_CAF1 10105 94 + 1 CUCCGACUACGGCGGCUACCGUCACUCCGGCGGCCAUUAGAAUCUUCUCGCCCGCCAUGGCUUCCCCUUUCUGAUGGCUGCUUUUCCGGUGCAG--------------------- ..(((.....(((((...))))).....((((((((((((((.......(((......))).......))))))))))))))....))).....--------------------- ( -34.94) >DroEre_CAF1 6101 94 + 1 CUCCCACAACGGCGGCCACCGUCACUCCAGCGGCCAUUAGAAUCUUUUCGCUCUCCAUGGCUCAGGACUAGUGAUUUUUGGUUUUCUAGUGCGG--------------------- ..(((((...((..((((..((((((((...((((((.(((..........)))..))))))..)))...)))))...))))..))..))).))--------------------- ( -23.80) >DroYak_CAF1 5944 94 + 1 CUCCCACCACGGCGGCCACCGUCACUCCGGCGGCCAUUAGAAUCUUCUCGCUCUCCAUGGCUUCGGAUUUCCGAUGGCUGGUUAACCGGUGCGG--------------------- ..((((((..(((((((.(((......))).))))....((......)))))......((((((((....)))).))))((....)))))).))--------------------- ( -34.10) >DroAna_CAF1 5581 109 + 1 CUCCUACAACGGCGGCCACCGUCACCCCGGCAGCCAUUAGAAUCUUCUCGCUUUCCAUUGGAU------CCUGGUGUCCUGAUUCUCGGGGCUGGCGGAGGCUAACAGCGGGCGG (.((..(...(((((...))))).(((((.(((((...((((((....((((.(((...))).------...))))....))))))...))))).))).))......)..)).). ( -41.00) >consensus CUCCGACUACGGCGGCCACCGUCACUCCGGCGGCCAUUAGAAUCUUCUCGCUCUCCAUGGCUUAAGAUUUCUGAUGGCUGGUUUUCCGGUGCAG_____________________ ..........(((((...))))).(.((((((((((((((((.......(((......))).......)))))))))))).....)))).)........................ (-20.27 = -21.81 + 1.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:26:25 2006