Locus 2107

Sequence ID X_DroMel_CAF1
Location 5,722,975 – 5,723,073
Length 98
Max. P 0.636278
window3425

overview

Window 5

Location 5,722,975 – 5,723,073
Length 98
Sequences 6
Columns 106
Reading direction reverse
Mean pairwise identity 79.36
Mean single sequence MFE -28.29
Consensus MFE -21.09
Energy contribution -22.01
Covariance contribution 0.92
Combinations/Pair 1.15
Mean z-score -1.14
Structure conservation index 0.75
SVM decision value 0.21
SVM RNA-class probability 0.636278
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 5722975 98 - 22224390
GUUAAAACAAACACU--UUUGCUCAUGAUUACAGGCUGGCACUCCCUGGGGCUCGACAAUGUCGCUGUAUUCCUCCAGCCUGCCGAUGAACAAUGGC------GUU
.........(((.((--.(((.((((.....((((((((..(((....)))..((((...))))..........))))))))...)))).))).)).------))) ( -25.10)
>DroSec_CAF1 141 98 - 1
GUUAAAACAAAAACU--UUUGUUUAUGAUUGCAGGCUGGCACACCCUGGGGCUCGACAAUGUCGCUGUAUUCCUCCAGCCUGCCGAUGAACAAUGGC------GUG
.............((--.((((((((....(((((((((........(.(((........))).).........)))))))))..)))))))).)).------... ( -28.13)
>DroSim_CAF1 7392 98 - 1
GUUAAAACAAAAACU--UUUGUUUAUGAUUGCAGGCUGGCACACCCUGGGGCUCGACAAUGUCGCUGUAUUCCUCCAGCCUGCCGAUGAACAAUGGC------GUG
.............((--.((((((((....(((((((((........(.(((........))).).........)))))))))..)))))))).)).------... ( -28.13)
>DroEre_CAF1 4533 81 - 1
GC-------------------UUUACGAUUGCAGGCUGGCACUCCCUGGGGCUCGACAAUGUCGCUCUAUUCCUCCAGCCUGCCGAUGAACAAUGGC------GUG
((-------------------(.....((((((((((((.......((((((..(((...))))))))).....)))))))).)))).......)))------... ( -26.40)
>DroYak_CAF1 4387 92 - 1
GAUACA---AAA-----UUUGUUUAUGAAUGCAGGCUGGCACUCCCUGGGGCUCGACGAUGUCCCUGUAUUCCUCCAGCCUGCCGAUGAACAAUGGC------GUG
......---...-----.((((((((....(((((((((........(((((........))))).........)))))))))..))))))))....------... ( -32.03)
>DroAna_CAF1 3978 92 - 1
-----------AACUUCUCUGUUU---AUUUUAGGCUGGGACCCCGUGGGGCUCUACCAUGUCCCUGUACUCAUCCAGUCUGCCGAUGAACAAUGGCGUAAGCGUG
-----------........(((((---(((.(((((((((.......(((((........)))))........)))))))))..))))))))...((....))... ( -29.96)
>consensus
GUUAAA___AAAACU__UUUGUUUAUGAUUGCAGGCUGGCACUCCCUGGGGCUCGACAAUGUCGCUGUAUUCCUCCAGCCUGCCGAUGAACAAUGGC______GUG
...................(((((((....(((((((((........(.(((........))).).........)))))))))..))))))).............. (-21.09 = -22.01 +   0.92)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:26:24 2006