Locus 2106

Sequence ID X_DroMel_CAF1
Location 5,721,448 – 5,721,538
Length 90
Max. P 0.967176
window3424

overview

Window 4

Location 5,721,448 – 5,721,538
Length 90
Sequences 4
Columns 117
Reading direction forward
Mean pairwise identity 76.01
Mean single sequence MFE -24.50
Consensus MFE -19.31
Energy contribution -20.88
Covariance contribution 1.56
Combinations/Pair 1.20
Mean z-score -1.87
Structure conservation index 0.79
SVM decision value 1.61
SVM RNA-class probability 0.967176
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 5721448 90 + 22224390
UUCAAUUUCCUGGUCCACCACCUCUUUCUGCUUCUGCGGCUGCGCGGGCUCCUGUGCCUCCAAUUCAACUGGACCUGGUGACUUCACCUG---------------------------
...........((((((............((....))((..((((((....))))))..))........)))))).((((....))))..--------------------------- ( -29.00)
>DroSim_CAF1 3664 117 + 1
GUCCAUUUCCUGGUCCACCUCCACUUCCUGCUCUUGCGGCUGCGCGGGCUCCUGUGCCUGCAAUUCAACUGAAACUGGUGACUUCACCUGCUCCUGNNNNNNNNNNNNNNNNNNNNN
(.(((.....))).)............((((....))))..((((((((......))))))...............((((....)))).)).......................... ( -24.80)
>DroEre_CAF1 3038 90 + 1
GUCAAUUUCCUGGUCCAUUUCAGCUUCCUGCUCUUGCGGCUGCGCUUGUUCCUGUACCUGCAAUUCAACUGGAACUGGUGAUUUCACCUG---------------------------
...........((((((....(((.....))).((((((.((((........)))).))))))......))).)))((((....))))..--------------------------- ( -19.90)
>DroYak_CAF1 2843 90 + 1
GUCAAUUUCCUGGUCCAUCUCCACUUCCCGCUCUUGCGGCUGCGCUUCUUCCUGUGCCUGCAAUUCAACUGGAUCUGGUGACUUCACCUG---------------------------
((((....((.((((((...........(((....)))((.((((........))))..))........)))))).))))))........--------------------------- ( -24.30)
>consensus
GUCAAUUUCCUGGUCCACCUCCACUUCCUGCUCUUGCGGCUGCGCGGGCUCCUGUGCCUGCAAUUCAACUGGAACUGGUGACUUCACCUG___________________________
...........((((((..........((((....))))....((((((......))))))........)))))).((((....))))............................. (-19.31 = -20.88 +   1.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:26:23 2006