Locus 2105

Sequence ID X_DroMel_CAF1
Location 5,721,208 – 5,721,328
Length 120
Max. P 0.632251
window3423

overview

Window 3

Location 5,721,208 – 5,721,328
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 78.92
Mean single sequence MFE -37.64
Consensus MFE -22.83
Energy contribution -22.95
Covariance contribution 0.12
Combinations/Pair 1.25
Mean z-score -1.75
Structure conservation index 0.61
SVM decision value 0.20
SVM RNA-class probability 0.632251
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 5721208 120 - 22224390
ACCGAGGUGGUUACCAUUCCAGCUCCUCUUCAUCUCAAAGGGACACAACAACUGGGGCUGCCAUUGGCUGCCCCACCGCCACCACCACCUCCUCCAGCAGCGGAACAAGUCCCCGAGACU
...(((.(((........))).))).......((((...(((((........((((((.(((...))).))))))((((....................)))).....))))).)))).. ( -41.45)
>DroSim_CAF1 3424 120 - 1
ACCGAGGUGGUUACCAUUCCAGCUCCUCUUCAUCUCAAAGGGGCACAACAACUGGGGCUGCCAUUGGCUGCCCCACCGCCACCACCACCUCCACCAGCAGCGGAAGAAGUUCCCGAGACU
...((((((((..........((((((...........))))))........((((((.(((...))).))))))........))))))))........(.((((....)))))...... ( -40.60)
>DroEre_CAF1 2798 120 - 1
ACCGAGGUGGUCACCAUUCCAGCUCCUCUUCGUCUUAAAGGGGCACAACAACUGGGGCUGCCACUGGCUAACCCAUCGCCACCACCACCUCCGCCAGCAGAGGAUGAAGUCCCCGAGACU
...(((.(((........))).)))......(((((...(((((........((((...(((...)))...))))..........((((((.(....).)))).))..))))).))))). ( -37.70)
>DroYak_CAF1 2603 120 - 1
ACCGAGGUGGUCACCAUUCCAGCUCCACUUCGUCUCAAAGGGGCACAACAACUGAGUCUGCCACUGGCUGCCCCACCGCCACCACCACCUCCUCCAGCAGAGGAAGAAGUCCCCGAGACU
...(((((((..............)))))))(((((...(((((.((.....))((((.......))))))))).............(.(((((.....))))).)........))))). ( -37.14)
>DroAna_CAF1 2163 102 - 1
ACGGAGGUGGUUACCAUUCCCGCGCCACUGUGUCUAAA------------------GCUGCCACUGGGUCCUCCGGCCCCGCCACCACCUCGAGGGGGCAUGAAUGAUAUCCCAGACACG
.(((..((((...))))..))).......((((((...------------------.........(((((....))))).(((.((........)))))..............)))))). ( -31.30)
>consensus
ACCGAGGUGGUUACCAUUCCAGCUCCUCUUCGUCUCAAAGGGGCACAACAACUGGGGCUGCCACUGGCUGCCCCACCGCCACCACCACCUCCACCAGCAGAGGAAGAAGUCCCCGAGACU
...((((((((........(((((((...........................)))))))....((((.(.....).))))..))))))))................((((.....)))) (-22.83 = -22.95 +   0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:26:22 2006