| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 5,713,711 – 5,713,802 |
| Length | 91 |
| Max. P | 0.605394 |
| Location | 5,713,711 – 5,713,802 |
|---|---|
| Length | 91 |
| Sequences | 4 |
| Columns | 97 |
| Reading direction | reverse |
| Mean pairwise identity | 88.15 |
| Mean single sequence MFE | -19.50 |
| Consensus MFE | -14.35 |
| Energy contribution | -15.35 |
| Covariance contribution | 1.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.57 |
| Structure conservation index | 0.74 |
| SVM decision value | 0.15 |
| SVM RNA-class probability | 0.605394 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5713711 91 - 22224390 GUGGAAAUAAUUAAAAUUGUUCGAAGAACGA-GAGGUGUUGCACUUUGCAUGUCGGCGAAAGGGGGAUUGAUGUGCAACAU-----AUAUGUACAUA (((...(((.......((((((...))))))-...(((((((((....((..((..(....)..))..))..)))))))))-----.)))...))). ( -20.70) >DroSec_CAF1 41323 83 - 1 GUGGAAAUAAUUAAAAUUGUUCGAAGAACGA-GAGGUGUUGCACUUUGCAUGUCGACGAAAGGGGGAUUGAUGUGCAACAU-----AUA-------- ................((((((...))))))-...(((((((((....((..((..(....)..))..))..)))))))))-----...-------- ( -20.80) >DroSim_CAF1 39679 83 - 1 GUGGAAAUAAUUAAAAUUGUUCGAAGAACGA-GAGGUGUUGCACUUUGCAUGUCGACGAAAGGGGGAUUGAUGUGCAACAU-----AUA-------- ................((((((...))))))-...(((((((((....((..((..(....)..))..))..)))))))))-----...-------- ( -20.80) >DroEre_CAF1 33767 89 - 1 GUGGAAAUAAUUAAAAUUGUUCGAAGCACGAAGAAGUGUUGCACUUUGCAUGUCGGCGAAAGGGGGAUUUAUGUGGCACAUGGUGUAUG-------- .............(((((.(((...((.(((.((((((...)))))).....)))))....))).))))).....((((...))))...-------- ( -15.70) >consensus GUGGAAAUAAUUAAAAUUGUUCGAAGAACGA_GAGGUGUUGCACUUUGCAUGUCGACGAAAGGGGGAUUGAUGUGCAACAU_____AUA________ ................((((((...))))))....(((((((((....((..((..(....)..))..))..)))))))))................ (-14.35 = -15.35 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:26:19 2006