| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 749,021 – 749,117 |
| Length | 96 |
| Max. P | 0.788259 |
| Location | 749,021 – 749,117 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 109 |
| Reading direction | forward |
| Mean pairwise identity | 77.66 |
| Mean single sequence MFE | -19.92 |
| Consensus MFE | -8.06 |
| Energy contribution | -8.03 |
| Covariance contribution | -0.03 |
| Combinations/Pair | 1.23 |
| Mean z-score | -2.47 |
| Structure conservation index | 0.40 |
| SVM decision value | 0.58 |
| SVM RNA-class probability | 0.788259 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 749021 96 + 22224390 AGGCAAAAU------UUCAAAUGGGAAAUGGGAAAUGGCA-------ACUGGCAAAUGGCAAAUGCAUAAAACAGGAAUAAAAUAUUCAUAGCACACUUUUUGCCAUAC .((((((((------(((..((.....))..))))).((.-------.(((.......((....))......)))(((((...)))))...))......)))))).... ( -19.22) >DroSec_CAF1 64076 88 + 1 A-GCAAAAU------UUCAAAUGGG-------AAAUGGCA-------ACUGGCAAAUGGCAAAUGCAUAAAACAGGAAUGAAAUAUUCAUAGCGCACUUUUUGCCAUAC .-((...((------(((......)-------)))).)).-------........(((((((((((.........(((((...))))).....)))...)))))))).. ( -16.44) >DroSim_CAF1 33136 88 + 1 A-GCAAAAU------UUCAAAUGGG-------AAAUGGCA-------ACUGGCAAAUGGCAAAUGCAUAAAACAGGAAUAAAAUAUUCAUAGCGCACUCUUUGCCAUAC .-((...((------(((......)-------)))).)).-------........(((((((((((.........(((((...))))).....)))...)))))))).. ( -16.74) >DroEre_CAF1 70213 80 + 1 AGGCAAAAU------UUCAAAUGGGAAAU---------------------GGCAAAUGGCAAAUGCAUAAAGCAGGAAUGAAAUAUUCAUUGCAUACUUUUUGCCAU-- ..((...((------(((......)))))---------------------.))..(((((((((((.....)))(.(((((.....))))).)......))))))))-- ( -20.60) >DroYak_CAF1 67001 103 + 1 AGGCAAAAU------UUCAAAUGGCAAAUGGGAAAUGGCAAACGGCAAACGGCAAAUGGCAAAUGCAUAAAACAGCAAUGAAAUAUUCAUUGCAUACUUUUUGCCAUAC .........------.....((((((((.((......(((..((.....))((.....))...)))........(((((((.....)))))))...)).)))))))).. ( -25.60) >DroMoj_CAF1 123110 95 + 1 AGGCAAAAGGCGAGCUGCAAACAGC-------AAACGCCAA-------ACGGCAAAUGGCAAAUGCAUAAAACACAAAUAAAAUAUUCAUUGCAUACUUUUAGUCGUUC .((((((((((..((((....))))-------....(((..-------..))).....))..(((((.......................))))).))))).))).... ( -20.90) >consensus AGGCAAAAU______UUCAAAUGGG_______AAAUGGCA_______ACUGGCAAAUGGCAAAUGCAUAAAACAGGAAUAAAAUAUUCAUAGCACACUUUUUGCCAUAC .......................................................((((((((............(((((...)))))...........)))))))).. ( -8.06 = -8.03 + -0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:04 2006