Locus 2097

Sequence ID X_DroMel_CAF1
Location 5,704,488 – 5,704,586
Length 98
Max. P 0.691416
window3412

overview

Window 2

Location 5,704,488 – 5,704,586
Length 98
Sequences 3
Columns 98
Reading direction forward
Mean pairwise identity 97.96
Mean single sequence MFE -18.50
Consensus MFE -17.77
Energy contribution -18.10
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -1.70
Structure conservation index 0.96
SVM decision value 0.33
SVM RNA-class probability 0.691416
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 5704488 98 + 22224390
GAUGGGAAAUGUAGGAAAAUGGUAGGAAAACAGUCGAAUAAAUGGCUGGAAAGAGGAGACGUGGUCAUAAUGACAAUGCCACUGGAACAGAGAAACCA
..(((..............(((((......((((((......))))))......(....)...(((.....)))..)))))(((...))).....))) ( -17.30)
>DroSec_CAF1 25581 98 + 1
GAUGGGAAAUGUGGGAAAAUGGUAGGAAAACAGUCGAAUAAAUGGCUGGGAAGAGGAGACGUGGUCAUAAUGACAAUGCCACUGGUACAGAGAAACCA
..(((....(.((......(((((......((((((......))))))......(....)...(((.....)))..)))))......)).)....))) ( -19.10)
>DroSim_CAF1 30379 98 + 1
GAUGGGAAAUGUGGGAAAAUGGUAGGAAAACAGUCGAAUAAAUGGCUGGGAAGAGGAGACGUGGUCAUAAUGACAAUGCCACUGGAACAGAGAAACCA
..(((....(.((......(((((......((((((......))))))......(....)...(((.....)))..)))))......)).)....))) ( -19.10)
>consensus
GAUGGGAAAUGUGGGAAAAUGGUAGGAAAACAGUCGAAUAAAUGGCUGGGAAGAGGAGACGUGGUCAUAAUGACAAUGCCACUGGAACAGAGAAACCA
..(((....(.((......(((((......((((((......))))))......(....)...(((.....)))..)))))......)).)....))) (-17.77 = -18.10 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:26:11 2006