Locus 209

Sequence ID X_DroMel_CAF1
Location 747,835 – 747,925
Length 90
Max. P 0.717126
window318

overview

Window 8

Location 747,835 – 747,925
Length 90
Sequences 3
Columns 118
Reading direction reverse
Mean pairwise identity 74.93
Mean single sequence MFE -31.41
Consensus MFE -17.42
Energy contribution -18.59
Covariance contribution 1.17
Combinations/Pair 1.08
Mean z-score -1.93
Structure conservation index 0.55
SVM decision value 0.39
SVM RNA-class probability 0.717126
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 747835 90 - 22224390
ACAG-------------UGGAAGUGGUUCAA----------GUCAGUCACUCG-----AUCGCAUUAAGUGGCUAUAUCCCACUUCCGCAUUUGUGGCUUUCUCUGCUCACUUGGCUA
...(-------------(((((((((.....----------...(((((((..-----((...))..))))))).....))))))))))....(((((.......)).)))....... ( -29.52)
>DroSec_CAF1 62888 112 - 1
GCAGCGAGAACUUGAUUUGGAAGUGGUUCAAGGC-CUUUCAGUCAGUCACUCG-----AUCGCAUUAAGUGGCUAUAUCCCACUUCCGCAUUUGUGGCUUUCUCUGCUCACUUUGCUA
((((.((((.((.(((.(((((((((.....(((-......)))(((((((..-----((...))..))))))).....))))))))).)))...)).)))).))))........... ( -36.00)
>DroYak_CAF1 65790 115 - 1
GAAGCGAAAACUUGAUUUGGAAGCGGUUCAAGAUCCUUUC---UACUUACUCCGUCGCGUCGCUUUAAGUGGCUAUAUCCCAGUGCCGCAUUUGUGGCUUUCUCUGCUCACUUGGCUA
((.((((...........(((((.((((...)))))))))---...........)))).))(((..(((((((...........(((((....))))).......)).)))))))).. ( -28.72)
>consensus
GCAGCGA_AACUUGAUUUGGAAGUGGUUCAAG___CUUUC_GUCAGUCACUCG_____AUCGCAUUAAGUGGCUAUAUCCCACUUCCGCAUUUGUGGCUUUCUCUGCUCACUUGGCUA
..................((((((((.....((.....))....(((((((................))))))).....))))))))((....(((((.......)).)))...)).. (-17.42 = -18.59 +   1.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:03 2006