Locus 2087

Sequence ID X_DroMel_CAF1
Location 5,691,767 – 5,691,873
Length 106
Max. P 0.999035
window3393

overview

Window 3

Location 5,691,767 – 5,691,873
Length 106
Sequences 5
Columns 115
Reading direction reverse
Mean pairwise identity 72.87
Mean single sequence MFE -25.32
Consensus MFE -17.56
Energy contribution -16.84
Covariance contribution -0.72
Combinations/Pair 1.35
Mean z-score -2.63
Structure conservation index 0.69
SVM decision value 3.34
SVM RNA-class probability 0.999035
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 5691767 106 - 22224390
UGAUUAUAGC--UGAAAAUAAAUAUUUCACUAUAUUCGUUUAAUUGCAUUUCCAAAUGCAACAUUGCGUAUGAGUAAUGUGCAUCUGGGAAAAUUUAACA-------GCGGGCUU
.((.(((((.--(((((.......)))))))))).))(((.((((...((((((.(((((.((((((......))))))))))).)))))))))).))).-------........ ( -28.70)
>DroSec_CAF1 12812 106 - 1
UGAAUAUAGC--UCAAAAUAAAAAAUUCACCAUGCUCGUUUAAUUGCAUUUCCAAAUGCAACAUUGCGUAUGAGUAAUGUGCAUAUGGGAACAUUUAACA-------GCGGGUUU
..........--................(((.((((.(((....((..((((((.(((((.((((((......))))))))))).))))))))...))))-------)))))).. ( -27.00)
>DroSim_CAF1 15610 106 - 1
UGAAUAUAGC--UCAAAAUAAAAAAAUCACCAUGCUCGUUUAAUUGCAUUUCCAAAUGCAACAUUGCGUAUGAGCAAUGUGCAUAUGGGAACAUUUAACA-------GCGGGUAU
..........--...................((((((((((((.((..((((((.(((((.((((((......))))))))))).)))))))).))))..-------)))))))) ( -30.70)
>DroEre_CAF1 12197 91 - 1
UGAA-AUAGC--UCAAAGUAAAUAUUUGACCAU----GUUUAAUUGAAUUUCUAAGCGCAACAGUGCGUAUGAGUAAUGUGUGCAUAUGAU------GCA-----------UAUU
....-...((--(((...(((((((......))----))))).............(((((....))))).)))))...((((((((...))------)))-----------))). ( -19.10)
>DroYak_CAF1 13041 104 - 1
UGAA-AUAAUAGUGAAACACAAUGUUUG----------GUUAAUUGAAUUUCUAAGUGCAACAUUGCGUAUGAGUAAUGUACACAUGGGAACAUUUAACAUUUAGCAAUCGGCUU
.((.-......(((...)))..((((..----------(((((.((..((((((.(((..(((((((......))))))).))).)))))))).)))))....)))).))..... ( -21.10)
>consensus
UGAAUAUAGC__UCAAAAUAAAUAUUUCACCAU__UCGUUUAAUUGCAUUUCCAAAUGCAACAUUGCGUAUGAGUAAUGUGCAUAUGGGAACAUUUAACA_______GCGGGCUU
................................................((((((.(((((.((((((......))))))))))).))))))........................ (-17.56 = -16.84 +  -0.72)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:25:55 2006