| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 5,689,045 – 5,689,157 |
| Length | 112 |
| Max. P | 0.971246 |
| Location | 5,689,045 – 5,689,157 |
|---|---|
| Length | 112 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 85.29 |
| Mean single sequence MFE | -27.86 |
| Consensus MFE | -19.88 |
| Energy contribution | -21.04 |
| Covariance contribution | 1.16 |
| Combinations/Pair | 1.12 |
| Mean z-score | -2.81 |
| Structure conservation index | 0.71 |
| SVM decision value | 1.67 |
| SVM RNA-class probability | 0.971246 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5689045 112 - 22224390 UCAG--CUU------UGUGCGUAAUUUAAUUUAUGGUCAGCAUUUUCAAUCAUUCGAUUAUUUGAUUAAAAUGUUGACGGCUUACAUAAAAUGCAAUAUAAAUUGAUAUGCACACAGCAG ...(--((.------((((((((..(((((((((((((((((((((.(((((..........)))))))))))))))).((...........))..)))))))))))))))))).))).. ( -37.80) >DroSec_CAF1 9280 120 - 1 UCGGGGCUUCAAAGCCGAGCGUAAUUUAAUUUAUGGUCAGCAUUUUCAAUUAUUCGAUUAUUUGAUUAAAAUGUUGACGGCUUACAUAAAAUUCAAUAUAAAUUGAUAUGCACACAGCAG ....((((....))))..(((((..(((((((((((((((((((((.(((((..........))))))))))))))))(.....)...........)))))))))))))))......... ( -28.90) >DroSim_CAF1 10043 112 - 1 UCGG--CUU------UGAGCGUAAUUUAAUUUAUGGUCAGCAUUUUCAAUCAUUCGAUUAUUUGAUUAAAAUGUUGACGGCUUACAUAAAAUUCAAUAUAAAUUGAUAUGCACACAGCAG ...(--((.------((.(((((..(((((((((((((((((((((.(((((..........))))))))))))))))(.....)...........))))))))))))))).)).))).. ( -31.20) >DroEre_CAF1 8992 102 - 1 CCAG--CUU------UGAGCGUAAUUUAAUUUAUGGUCAGCACUUGCAAUCAUUCGAUUAUUUGAUUAAAAUGAUGGCGGCUUACAUGAAAUUCGAUGUAAAUUGAAUGG---------- ((((--(((------(((.(((((......))))).)))).....((.((((((.((((....))))..)))))).))))))........(((((((....)))))))))---------- ( -21.10) >DroYak_CAF1 10482 109 - 1 UCAG--CUU------UGGGCGUAAUUCAAUUUAUGGUCAGCAUUUUCAAUCAUUCGAUUAUUUGAUUAAACUGAUGACGGCUUACAUAAAUUUCGAUAUAAAUUGAUAUGCACAUUG--- ....--...------((.(((((..((((((((((((((.((.(((.(((((..........)))))))).)).))))(.....)...........))))))))))))))).))...--- ( -20.30) >consensus UCAG__CUU______UGAGCGUAAUUUAAUUUAUGGUCAGCAUUUUCAAUCAUUCGAUUAUUUGAUUAAAAUGUUGACGGCUUACAUAAAAUUCAAUAUAAAUUGAUAUGCACACAGCAG ..................(((((..(((((((((((((((((((((.(((((..........))))))))))))))))(.....)...........)))))))))))))))......... (-19.88 = -21.04 + 1.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:25:52 2006