| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 5,684,690 – 5,684,787 |
| Length | 97 |
| Max. P | 0.881519 |
| Location | 5,684,690 – 5,684,787 |
|---|---|
| Length | 97 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 79.15 |
| Mean single sequence MFE | -27.44 |
| Consensus MFE | -16.96 |
| Energy contribution | -19.18 |
| Covariance contribution | 2.22 |
| Combinations/Pair | 1.08 |
| Mean z-score | -2.06 |
| Structure conservation index | 0.62 |
| SVM decision value | 0.92 |
| SVM RNA-class probability | 0.881519 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5684690 97 + 22224390 --CAACAUCAU--CCCGCAUC-CAUAUUCCUGGCCAAAAGUUUGCGGAGCUACCGCUUCCCAAAGACUUGUGUCACCGGCAGA-AAUGCCGGAAAUCCAAGCG-------- --.........--..(((...-........((((...((((((..(((((....)))))....))))))..))))((((((..-..))))))........)))-------- ( -29.90) >DroSec_CAF1 5027 93 + 1 --CAACA---U--CCCGCAUC-CACAUUCC-GGCCAAAAGUUUGCGGAGCUACCGCUUCCCAAAGACUUGUGUCUCCGGCAGA-AAUGCCGGAAACCCAAGCG-------- --.....---.--..(((...-........-(((...((((((..(((((....)))))....))))))..)))(((((((..-..))))))).......)))-------- ( -30.40) >DroSim_CAF1 5601 93 + 1 --CAACA---U--CCCGCAUC-CACAUUCC-GGCCAAAAGUUUGCGGAGCUACCGCUUCCCAAAGACUUGUGUCUCCGGCAGA-AAUGCCGGAAAUCCAAGCG-------- --.....---.--..(((...-........-(((...((((((..(((((....)))))....))))))..)))(((((((..-..))))))).......)))-------- ( -30.40) >DroEre_CAF1 5064 95 + 1 AACAGCA---U--UCCGCAUC-CACAUUCC-GGCCAAAAGUUUGCGGAGCUGCCGCUUCCCAAAGUCUUGUGUCUCCGGCAGA-AAUGCCGGAAAUCCAAGCG-------- ..((((.---.--((((((..-(.......-........)..))))))))))............(.((((..(.(((((((..-..))))))).)..))))).-------- ( -33.36) >DroYak_CAF1 6223 96 + 1 UCCCACA---U--CCAGCAUCCCACAUUCC-GGCCAAAAGUUUGCGGAGCUAGCGCUUCCCAAAGUCUUGUGUCUCCAGCAGA-AAUGCCGGAAAUCCAAGCG-------- .......---.--...((............-((((((.(.((((.(((((....))))).)))).).))).)))(((.(((..-..))).))).......)).-------- ( -25.50) >DroPer_CAF1 52816 100 + 1 CACAUCAUCAUCAUCCAUAUC-CACAUUCU-GGCCAAAGUUUUUCUGUGUUUGU---------UGUGUUCUGUCUUAGCCAGAAAAUGCCGGAAAUCCAAGCUGUUAGUCA .....................-....((((-(((......(((((((.(((...---------.............)))))))))).)))))))................. ( -15.09) >consensus __CAACA___U__CCCGCAUC_CACAUUCC_GGCCAAAAGUUUGCGGAGCUACCGCUUCCCAAAGACUUGUGUCUCCGGCAGA_AAUGCCGGAAAUCCAAGCG________ ................((.............((((((...((((.(((((....))))).))))...))).)))(((((((.....))))))).......))......... (-16.96 = -19.18 + 2.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:25:51 2006