| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 745,038 – 745,130 |
| Length | 92 |
| Max. P | 0.886655 |
| Location | 745,038 – 745,130 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 96 |
| Reading direction | reverse |
| Mean pairwise identity | 67.73 |
| Mean single sequence MFE | -22.05 |
| Consensus MFE | -9.05 |
| Energy contribution | -8.38 |
| Covariance contribution | -0.66 |
| Combinations/Pair | 1.33 |
| Mean z-score | -1.93 |
| Structure conservation index | 0.41 |
| SVM decision value | 0.94 |
| SVM RNA-class probability | 0.886655 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 745038 92 - 22224390 ACUCUAAGGGCCGAAUGGAAACGCACAUCGAGUAUGGUCCUCAAAACGAAUGGCCAUCAU-UCGCCUAAUAAAUGAGGCAUUCCCAU--CCAGAA- .......(((......(....).......((((((((((.((.....))..)))))).))-))((((........))))...)))..--......- ( -21.00) >DroVir_CAF1 97465 85 - 1 ---------GAGGCAACUAACUGCCAAGCGACUGUGGCCUGCAAAAUUAAUGGCCAUCAG-UCGCAUAAUAAAUGAAGCAAUGUCUUUCGUCCUU- ---------..((((......))))..((((((((((((............))))).)))-)))).......((((((.......))))))....- ( -29.00) >DroPse_CAF1 89305 84 - 1 CAGCCAAAGACC------AAACG-ACGACGACGAUGGUCUGCAAAAUUAAUGGCCAUCAG-UCGCAUAAUAAAUGAAGAGCUCC--U--CCAGACC .((((.......------.....-....(((((((((((............))))))).)-)))(((.....)))..).)))..--.--....... ( -16.30) >DroGri_CAF1 107992 85 - 1 ---------AGGCAAACUAACUGCCAAGCGACUGUGGCCUGCAAAAUUAAUGGCCAUCAG-UCGCAUAAUAAAUGAAGCGAUGUCUUUGCCAGUU- ---------.((((.......))))..((((((((((((............))))).)))-))))............((((.....)))).....- ( -30.20) >DroSec_CAF1 60720 83 - 1 ---------GCCGAAUGGAAACGCACAUCGACUGUGGUCCUCAAAACGAAUGGCCACCAUUUCGCCUAAUA-AUGAGGCAUUCCCCU--CCAGAA- ---------...((..((((.............((((((.((.....))..))))))......((((....-...)))).))))..)--).....- ( -17.40) >DroSim_CAF1 30059 83 - 1 ---------GCCGAAUGGAAACGCACAUCGACUGUGGUCCUCAAAACGAAUGGCCACCAU-UCGCCUAAUAAAUGAGGCAUUCCCCU--CCAGAA- ---------...((((((...((.....))....(((((.((.....))..)))))))))-))((((........))))........--......- ( -18.40) >consensus _________GCCGAAUGGAAACGCACAUCGACUGUGGUCCGCAAAACGAAUGGCCAUCAG_UCGCAUAAUAAAUGAAGCAUUCCCCU__CCAGAA_ ............................(((..((((((............))))))....)))................................ ( -9.05 = -8.38 + -0.66)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:02 2006