| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 5,674,916 – 5,675,032 |
| Length | 116 |
| Max. P | 0.527837 |
| Location | 5,674,916 – 5,675,032 |
|---|---|
| Length | 116 |
| Sequences | 3 |
| Columns | 116 |
| Reading direction | reverse |
| Mean pairwise identity | 85.01 |
| Mean single sequence MFE | -33.13 |
| Consensus MFE | -21.70 |
| Energy contribution | -22.07 |
| Covariance contribution | 0.37 |
| Combinations/Pair | 1.18 |
| Mean z-score | -2.06 |
| Structure conservation index | 0.65 |
| SVM decision value | -0.01 |
| SVM RNA-class probability | 0.527837 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5674916 116 - 22224390 UGUCCACGGUGCGUAUGAGCGAUGGCAGGCAAGUUUGCAAAAGCGGGCAUCUUUCGGAUGGUGGAAAGUGAAGACUUGCCGCGAUUGGUAAUCAAAGAAAAAGGCAGAAAAGCACA ........((((...(((.((((.((.(((((((((.((....(.(.((((.....)))).).)....)).))))))))))).))))....)))..(.......)......)))). ( -32.90) >DroSec_CAF1 13899 115 - 1 UGGCCACGGUGCGUAUGAGCUAUGGCAGGUAAGC-UGCAAAAGCGAGCGUCUUUCGGAUGCUGGAAAAUGCAGACUUGCCGCGAUUGGUAAUCAAAGAGAAAGGCAGAAAAGCACA ..((((..((........))..)))).(((((((-((((....(.((((((.....)))))).)....))))).))))))((.....((..((.....))...))......))... ( -38.80) >DroSim_CAF1 14439 100 - 1 UGGCCACGGUGCGUAUGAGCGAUGGCAGGUAAGC-UGCAAAAGCGGGC---------------GAAAAUGCAGACUUGCCGCGAUUGGUAAUCAAAGAGAAAGGCAGAAAAGUACA ..((((((...))).(((.((((.((.(((((((-((((....(....---------------)....))))).)))))))).))))....)))........)))........... ( -27.70) >consensus UGGCCACGGUGCGUAUGAGCGAUGGCAGGUAAGC_UGCAAAAGCGGGC_UCUUUCGGAUG_UGGAAAAUGCAGACUUGCCGCGAUUGGUAAUCAAAGAGAAAGGCAGAAAAGCACA ........((((......((....((.(((((((.((((....(.(.((((.....)))).).)....))))).))))))))(((.....)))..........))......)))). (-21.70 = -22.07 + 0.37)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:25:42 2006