Locus 2078

Sequence ID X_DroMel_CAF1
Location 5,674,248 – 5,674,338
Length 90
Max. P 0.631009
window3378

overview

Window 8

Location 5,674,248 – 5,674,338
Length 90
Sequences 3
Columns 92
Reading direction forward
Mean pairwise identity 77.21
Mean single sequence MFE -33.07
Consensus MFE -23.92
Energy contribution -26.23
Covariance contribution 2.31
Combinations/Pair 1.12
Mean z-score -1.37
Structure conservation index 0.72
SVM decision value 0.20
SVM RNA-class probability 0.631009
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 5674248 90 + 22224390
GCAGUAU-CAGUGGGCGGUGGGCGUUGGCCGAUGGGUGGUGGGCGUUGUGUUAUCCUUCGUCCUUCGUCCAUUGUUGG-CCACCAAAGGAGU
.......-..((((((((((((((..((.(((.(((((..(.......)..))))).))).))..))))))))))...-))))......... ( -30.30)
>DroSec_CAF1 13283 81 + 1
GAAGUGGGCGUUGGGCGGUGGGCGGUGGGCGGUG-GCGGUGGGCGUUGUGUUAUCCUU-------CGUCCAUUGUUGGACCGCCGAAGG---
......((((((.((((((((((((.(((..(..-(((.....)))..)....))).)-------))))))))))).)).)))).....--- ( -33.00)
>DroSim_CAF1 13769 81 + 1
GCAGUGGG-------CGGUGGGCGGUGGGCGGUG-AUGGUGGGCGUUGUGUUAUCCUUCGUCCUUCGUCCAUUGUUGGACCGCCAAAGG---
......((-------((((.((((((((((((.(-((((.((..(......)..)).)))))..)))))))))))).).))))).....--- ( -35.90)
>consensus
GCAGUGGGC__UGGGCGGUGGGCGGUGGGCGGUG_GUGGUGGGCGUUGUGUUAUCCUUCGUCCUUCGUCCAUUGUUGGACCGCCAAAGG___
................((((((((((((((((.((((((.((..(......)..)).)))))).)))))))))))....)))))........ (-23.92 = -26.23 +   2.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:25:41 2006