Locus 2075

Sequence ID X_DroMel_CAF1
Location 5,672,936 – 5,673,054
Length 118
Max. P 0.866062
window3373

overview

Window 3

Location 5,672,936 – 5,673,054
Length 118
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 87.01
Mean single sequence MFE -28.76
Consensus MFE -24.90
Energy contribution -25.35
Covariance contribution 0.45
Combinations/Pair 1.04
Mean z-score -2.16
Structure conservation index 0.87
SVM decision value 0.85
SVM RNA-class probability 0.866062
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 5672936 118 - 22224390
--AAAGUGCACUUGGCACUUGGAAUAAAUCAUUAAAAAUAAUAAAUCAUAAAAAUUCCAAAUCCGAUUUAUUUAAUCGCCAACUGCAUAUUUGGCAGUGUACUUCGCUUAGCUUGAGUGC
--.(((((((((((((..(((((((............................)))))))....((((.....))))))))).(((.......)))))))))))(((((.....))))). ( -26.59)
>DroSec_CAF1 11986 114 - 1
--ACAGUGCACUUGGCACUUGGAAUAAAUCAUUAAAAAUAAGUAAGUGGGUAAGU----AAUCGGAUUUAUUUAAUUGCUAAGUGCAUUUUUGGCAGUGUACUUCGCUUAGCUUGAGUGC
--..(((((((((((((....(((((((((.(((....))).......(((....----.))).)))))))))...)))))))))))))((.(((((((.....))))..))).)).... ( -28.50)
>DroSim_CAF1 12471 116 - 1
AAACAGUGCACUUGGCACUUGGAAUAAAUCAUUAAAAAUAAGUAAGUGGGUAAGU----AAUCGGAUUUAUUUAAUUGCUAAGUGCAUUUUUGGCAGUGUACUUCGCUUGGCGUGAGUGC
....(((((((((((((....(((((((((.(((....))).......(((....----.))).)))))))))...))))))))))))).........(((((((((...))).)))))) ( -31.20)
>consensus
__ACAGUGCACUUGGCACUUGGAAUAAAUCAUUAAAAAUAAGUAAGUGGGUAAGU____AAUCGGAUUUAUUUAAUUGCUAAGUGCAUUUUUGGCAGUGUACUUCGCUUAGCUUGAGUGC
.....((((((((((((....(((((((((..................................)))))))))...)))))))))))).....((((((.....))))..))........ (-24.90 = -25.35 +   0.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:25:37 2006