| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 5,670,342 – 5,670,433 |
| Length | 91 |
| Max. P | 0.626436 |
| Location | 5,670,342 – 5,670,433 |
|---|---|
| Length | 91 |
| Sequences | 3 |
| Columns | 91 |
| Reading direction | forward |
| Mean pairwise identity | 78.29 |
| Mean single sequence MFE | -20.00 |
| Consensus MFE | -13.46 |
| Energy contribution | -13.13 |
| Covariance contribution | -0.33 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.54 |
| Structure conservation index | 0.67 |
| SVM decision value | 0.19 |
| SVM RNA-class probability | 0.626436 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5670342 91 + 22224390 UGCUCGCUUGCAAGUUUGUCUGUGUGUGUGUAUUUUAAUCACUAAAACGCAGCCAGCAAGUCCAUAAAAGGAUGCAGGACUUUAUAAACGU ......(((((..(((.(.((((((..(((.........)))....))))))).)))..((((......)))))))))............. ( -21.60) >DroSec_CAF1 9370 72 + 1 UG--------UAAGCUUGUCUGUG----UGUGUUUUAAUCACUAAAGCGUAG-------GUCCUUAAAAGGAUGCAGAACUUUGCAAACGU ((--------((((....(((((.----...((((((.....))))))....-------(((((....))))))))))..))))))..... ( -16.30) >DroSim_CAF1 9898 76 + 1 UG--------UAAGCUUGUCUGUGUGUGUGUGUUUUAAUCACUAAAACGCAG-------GUCCUUAAAAGGAUGCAGGACUUUACAAACGU ((--------(((((((((((((((....(((.......)))....))))))-------(((((....)))))))))).).)))))..... ( -22.10) >consensus UG________UAAGCUUGUCUGUGUGUGUGUGUUUUAAUCACUAAAACGCAG_______GUCCUUAAAAGGAUGCAGGACUUUACAAACGU ..................(((((.....(((((((((.....)))))))))........((((......)))))))))............. (-13.46 = -13.13 + -0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:25:34 2006