Locus 2069

Sequence ID X_DroMel_CAF1
Location 5,668,337 – 5,668,457
Length 120
Max. P 0.657909
window3362

overview

Window 2

Location 5,668,337 – 5,668,457
Length 120
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 97.22
Mean single sequence MFE -26.16
Consensus MFE -23.29
Energy contribution -22.85
Covariance contribution -0.44
Combinations/Pair 1.06
Mean z-score -2.00
Structure conservation index 0.89
SVM decision value 0.26
SVM RNA-class probability 0.657909
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 5668337 120 + 22224390
GAAUUUGAAUACUCACCGAAUGUGUACGAAAAGAAAUAUAAUGCCACACAUAUGAUGACGUGUUAAUUUUGCUUAAUUUAUGAAAUUAGCAACGUUCUGACUACGAGUUUUCAACACAAA
....(((((.((((..((.((((((....................)))))).))..((((((((((((((...........))))))))).)))))........)))).)))))...... ( -22.75)
>DroSec_CAF1 7394 120 + 1
GAAUUUGAAUACUCACCGAGUGUGUAUGAAAAGAAAUAUAAUGCCACACAUAUGAUGACGUGUUAAUUUUGCUUAAUUUAUGAAAUUAGCAACGUUCUGACUACGAGUUUUCAACACAAA
....(((((.((((.....((((((((.............))).))))).......((((((((((((((...........))))))))).)))))........)))).)))))...... ( -24.82)
>DroSim_CAF1 8197 120 + 1
GAAUUUGAAUACUCACCGAGUGUGUAUGAAAAGAAAUAUAAUGCCACACAUGUGAUGACGUGUUAAUUUUGCUUAAUUUAUGAAAUUAGCAACGUUCUCACUACGAGUUUUCGACACAAA
....(((((.((((.....((((((((.............))).)))))..((((.((((((((((((((...........))))))))).))))).))))...)))).)))))...... ( -30.92)
>consensus
GAAUUUGAAUACUCACCGAGUGUGUAUGAAAAGAAAUAUAAUGCCACACAUAUGAUGACGUGUUAAUUUUGCUUAAUUUAUGAAAUUAGCAACGUUCUGACUACGAGUUUUCAACACAAA
....(((((.((((..((.((((((....................)))))).))..((((((((((((((...........))))))))).)))))........)))).)))))...... (-23.29 = -22.85 +  -0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:25:27 2006