Locus 2066

Sequence ID X_DroMel_CAF1
Location 5,666,191 – 5,666,303
Length 112
Max. P 0.858338
window3358

overview

Window 8

Location 5,666,191 – 5,666,303
Length 112
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 93.89
Mean single sequence MFE -28.20
Consensus MFE -26.09
Energy contribution -25.87
Covariance contribution -0.22
Combinations/Pair 1.05
Mean z-score -2.09
Structure conservation index 0.93
SVM decision value 0.82
SVM RNA-class probability 0.858338
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 5666191 112 - 22224390
CAUUUA--------UUUGGUGAUUAUAUUUUCACUUUCAUGGCGAACUCGCUUAAUAUUCGCGCUUCUCUUUGAACAGCUUAACGGGGAUAAUCCCCAACAUCAUCGGUUCGUCAAAGUA
......--------...(((((........)))))....((((((((.((..........((..(((.....)))..)).....((((.....))))........))))))))))..... ( -27.80)
>DroSec_CAF1 5358 120 - 1
CAUUUAUUCAUUGAUUUGGUGAUUAUAUUUUCACUUUCACGGCGGACUCGCUUAAUAUUCGCGCAUCUCUUUGAACAGCUUAACGGGGAUAAUCCCCAACAUCAUCGGUUCGUCAAAGUA
...........(((...(((((........))))).))).(((((((.((..........((...((.....))...)).....((((.....))))........)))))))))...... ( -28.00)
>DroSim_CAF1 5746 120 - 1
CAUUUAUUCAUUGAUUUGGUGAUUAUAUUUUCACUUUCACGGCGGACUCGCUUAAUAUUCGCGCUUCUCUUUGAACAGCUUAACGGGGAUAAUCCCCAACAUCAUCGGUUCGUCAAAGUA
...........(((...(((((........))))).))).(((((((.((..........((..(((.....)))..)).....((((.....))))........)))))))))...... ( -28.80)
>consensus
CAUUUAUUCAUUGAUUUGGUGAUUAUAUUUUCACUUUCACGGCGGACUCGCUUAAUAUUCGCGCUUCUCUUUGAACAGCUUAACGGGGAUAAUCCCCAACAUCAUCGGUUCGUCAAAGUA
.................(((((........))))).....(((((((.((..........((...((.....))...)).....((((.....))))........)))))))))...... (-26.09 = -25.87 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:25:24 2006