Locus 2065

Sequence ID X_DroMel_CAF1
Location 5,665,849 – 5,665,969
Length 120
Max. P 0.689271
window3357

overview

Window 7

Location 5,665,849 – 5,665,969
Length 120
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 97.22
Mean single sequence MFE -28.25
Consensus MFE -26.08
Energy contribution -26.31
Covariance contribution 0.23
Combinations/Pair 1.09
Mean z-score -1.86
Structure conservation index 0.92
SVM decision value 0.32
SVM RNA-class probability 0.689271
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 5665849 120 - 22224390
UAGAGUUCGGUUUGCUUCGGCUGCGGUGUUUUUCCAGCCCAGCAAUAGCAAUCACGAUAAUAAGCAUAAAUAAAGAGGCCAACAAAAAAAUUACACAGCCAUAAAAAAGGGCAAAUGGCA
.........(((.((((((((((.((......)))))))..((....)).........................))))).)))..............(((((............))))). ( -25.00)
>DroSec_CAF1 5013 120 - 1
UAGAGUGCGGUUGGCUUCGGCUGCGGUGUUUUUCCAACCCAGGAAUAGCAAUCACGAUAAUAAGCAUAAAUAAAGAGGCCAACAAAAAAAUUACACAGCUAUAAAAAAGGGCAAAUGGCA
.....(((.(((((((((.(((.((.((((.((((......)))).))))....))......))).........)))))))))..............(((.........))).....))) ( -28.60)
>DroSim_CAF1 5401 120 - 1
UAGAGUGCGGUUGGCUUCGGCUGCGGUGUUUUUCCAACCCAGCAAUAGCAAUCACGAUAAUAAGCAUAAAUAAAGAGGCCAACAAAAAAAUUACACAGCCAUAAAAAAGGGCAAAUGGCA
.....(((.(((((((((.((((.(((.........)))))))....((..............)).........)))))))))..............(((.........))).....))) ( -31.14)
>consensus
UAGAGUGCGGUUGGCUUCGGCUGCGGUGUUUUUCCAACCCAGCAAUAGCAAUCACGAUAAUAAGCAUAAAUAAAGAGGCCAACAAAAAAAUUACACAGCCAUAAAAAAGGGCAAAUGGCA
.........(((((((((.((((.(((.........)))))))....((..............)).........)))))))))..............(((((............))))). (-26.08 = -26.31 +   0.23)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:25:23 2006